DNATCO v4.1: results

Structure of the product complex of tRNA m1A58 methyltransferase with tRNA3Lys as substrate

Results of the assignment of 80 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	5ccx_N_G0_G1	AAw	AA05	79	0.14	AA05
02	5ccx_N_G1_C2	AAA	AA00	81	0.11	AA00
03	5ccx_N_C2_C3	AAA	AA00	89	0.16	AA00
04	5ccx_N_C3_C4	AAA	AA00	94	0.16	AA00
05	5ccx_N_C4_G5	AAA	AA00	71	0.21	AA00
06	5ccx_N_G5_G6	AAw	AA01	72	0.21	AA01
07	5ccx_N_G6_A7	A-B	AB05	73	0.28	AB05
08	5ccx_N_A7_U8	OPN	OP11	62	0.50	OP11
09	5ccx_N_U8_A9	ICL	IC01	86	0.15	IC01
10	5ccx_N_A9_G10	NAN	NANT	0	1.29	OP26
11	5ccx_N_G10_C11	AAA	AA00	56	0.20	AA00
12	5ccx_N_C11_U12	AAA	AA00	63	0.19	AA00
13	5ccx_N_U12_C13	AAw	AA01	89	0.23	AA01
14	5ccx_N_C13_A.A14	NAN	NANT	0	0.54	AA06
15	5ccx_N_C13_A.B14	AAA	AA00	76	0.22	AA00
16	5ccx_N_A.A14_G.A15	NAN	NANT	0	1.95	OP21
17	5ccx_N_A.B14_G.B15	NAN	NANT	0	0.47	OP28
18	5ccx_N_G.A15_U16	NAN	NANT	0	0.62	OP13
19	5ccx_N_G.B15_U16	NAN	NANT	0	0.57	OP13
20	5ccx_N_U16_C17	NAN	NANT	0	1.00	OP20
21	5ccx_N_C17_G18	NAN	NANT	0	0.85	OP17
22	5ccx_N_G18_G19	NAN	NANT	0	0.93	OP13
23	5ccx_N_G19_U20	NAN	NANT	0	1.08	IC01
24	5ccx_N_U20_A21	NAN	NANT	0	1.18	IC05
25	5ccx_N_A21_G22	NAN	NANT	0	1.13	OP19
26	5ccx_N_G22_A23	AAw	AA01	96	0.15	AA01
27	5ccx_N_A23_G24	AAA	AA08	92	0.17	AA08
28	5ccx_N_G24_C25	AAA	AA00	90	0.15	AA00
29	5ccx_N_C25_A26	AAA	AA08	72	0.37	AA08
30	5ccx_N_A26_U27	AAA	AA00	91	0.20	AA00
31	5ccx_N_U27_C28	AAA	AA00	93	0.14	AA00
32	5ccx_N_C28_A29	AAA	AA00	93	0.11	AA00
33	5ccx_N_A29_G30	AAA	AA00	98	0.10	AA00
34	5ccx_N_G30_A31	AAA	AA00	85	0.19	AA00
35	5ccx_N_A31_C32	AAA	AA00	83	0.23	AA00
36	5ccx_N_C32_U33	A-B	AB05	88	0.25	AB05
37	5ccx_N_U33_U34	NAN	NANT	0	1.52	BB00
38	5ccx_N_U34_U35	NAN	NANT	0	1.00	OP20
39	5ccx_N_U35_U36	NAN	NANT	0	0.68	OP30
40	5ccx_N_U36_A37	NAN	NANT	0	1.05	OPS1
41	5ccx_N_A37_A38	AAA	AA00	59	0.28	AA00
42	5ccx_N_A38_U39	AAA	AA00	88	0.21	AA00
43	5ccx_N_U39_C40	AAA	AA08	87	0.17	AA08
44	5ccx_N_C40_U41	AAA	AA00	95	0.12	AA00
45	5ccx_N_U41_G42	AAA	AA00	84	0.22	AA00
46	5ccx_N_G42_A43	AAA	AA00	88	0.19	AA00
47	5ccx_N_A43_G44	AAA	AA00	94	0.12	AA00
48	5ccx_N_G44_G45	AAA	AA00	68	0.34	AA00
49	5ccx_N_G45_G46	ICL	IC01	86	0.19	IC01
50	5ccx_N_G46_U47	NAN	NANT	0	0.89	OP12
51	5ccx_N_U47_C48	NAN	NANT	0	1.69	OP24
52	5ccx_N_C48_C49	NAN	NANT	0	1.69	OP05
53	5ccx_N_C49_A50	AAA	AA00	73	0.15	AA00
54	5ccx_N_A50_G51	AAA	AA00	91	0.08	AA00
55	5ccx_N_G51_G52	AAA	AA00	83	0.15	AA00
56	5ccx_N_G52_G53	AAA	AA00	87	0.19	AA00
57	5ccx_N_G53_U54	AAA	AA00	62	0.28	AA00
58	5ccx_N_U54_U55	AAu	AA12	72	0.28	AA12
59	5ccx_N_U55_C56	NAN	NANT	0	0.95	OP05
60	5ccx_N_C56_A57	NAN	NANT	0	0.90	BB20
61	5ccx_N_A57_1MA.A58	NAN	NANT	0	1.64	BB1S
62	5ccx_N_A57_1MA.B58	NAN	NANT	0	1.45	OPS1
63	5ccx_N_1MA.A58_G.A59	NAN	NANT	0	1.72	ZZS1
64	5ccx_N_1MA.B58_G.A59	NAN	NANT	0	0.77	IC04
65	5ccx_N_G.A59_U.A60	NAN	NANT	0	2.40	OP28
66	5ccx_N_U.A60_C.A61	OPN	OP11	42	0.58	OP11
67	5ccx_N_C.A61_C62	AAA	AA00	94	0.18	AA00
68	5ccx_N_C62_C63	AAA	AA00	97	0.11	AA00
69	5ccx_N_C63_U64	AAA	AA00	96	0.11	AA00
70	5ccx_N_U64_G65	AAA	AA00	91	0.16	AA00
71	5ccx_N_G65_U66	AAA	AA00	93	0.10	AA00
72	5ccx_N_U66_U67	AAA	AA08	85	0.18	AA08
73	5ccx_N_U67_C68	AAA	AA00	71	0.26	AA00
74	5ccx_N_C68_G69	AAA	AA00	57	0.21	AA00
75	5ccx_N_G69_G70	AAA	AA00	75	0.20	AA00
76	5ccx_N_G70_G71	AAA	AA00	89	0.17	AA00
77	5ccx_N_G71_C72	AAA	AA00	77	0.26	AA00
78	5ccx_N_C72_G73	NAN	NANT	0	0.56	AA05
79	5ccx_N_G73_C74	NAN	NANT	0	0.74	AB05
80	5ccx_N_C74_C75	NAN	NANT	0	0.97	OP26

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 80 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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