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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of human m1A58 methyltransferase in a complex with tRNA3Lys and SAH

Results of the assignment of 78 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
015ccb_N_G0_G1AAwAA05700.24 AA05
025ccb_N_G1_C2AAAAA00760.14 AA00
035ccb_N_C2_C3AAAAA00820.21 AA00
045ccb_N_C3_C4AAwAA01130.26 AA01
055ccb_N_C4_G5AAAAA00590.31 AA00
065ccb_N_G5_G6NANNANT00.37 AA06
075ccb_N_G6_A7NANNANT00.53 AA01
085ccb_N_A7_U8OPNOP11580.37 OP11
095ccb_N_U8_A9ICLIC01860.14 IC01
105ccb_N_A9_G10NANNANT01.29 OP26
115ccb_N_G10_C11AAAAA08690.22 AA08
125ccb_N_C11_U12AAAAA00820.15 AA00
135ccb_N_U12_C13AAwAA01860.23 AA01
145ccb_N_C13_A14AAAAA08920.12 AA08
155ccb_N_A14_G15NANNANT00.41 OP28
165ccb_N_G15_U16NANNANT01.00 OP17
175ccb_N_U16_C17NANNANT00.86 OP20
185ccb_N_C17_G18NANNANT00.79 OP17
195ccb_N_G18_G19NANNANT00.87 OP13
205ccb_N_G19_U20NANNANT00.67 IC05
215ccb_N_U20_A21NANNANT01.13 IC05
225ccb_N_A21_G22NANNANT01.14 OP19
235ccb_N_G22_A23AAwAA10980.09 AA10
245ccb_N_A23_G24AAAAA08930.17 AA08
255ccb_N_G24_C25AAAAA00870.16 AA00
265ccb_N_C25_A26AAAAA08640.37 AA08
275ccb_N_A26_U27AAAAA00880.21 AA00
285ccb_N_U27_C28AAAAA00830.14 AA00
295ccb_N_C28_A29AAAAA00830.15 AA00
305ccb_N_A29_G30NANNANT00.38 AA10
315ccb_N_G30_A31AAAAA08960.16 AA08
325ccb_N_A31_C32AAAAA00800.21 AA00
335ccb_N_C32_U33A-BAB05870.22 AB05
345ccb_N_U33_U34NANNANT01.55 BB00
355ccb_N_U34_U35NANNANT00.97 OP20
365ccb_N_U35_U36NANNANT00.67 OP30
375ccb_N_U36_A37NANNANT01.91 OP29
385ccb_N_A37_A38AAAAA00510.26 AA00
395ccb_N_A38_U39AAAAA00830.21 AA00
405ccb_N_U39_C40AAAAA08900.17 AA08
415ccb_N_C40_U41AAAAA00900.15 AA00
425ccb_N_U41_G42AAAAA00630.26 AA00
435ccb_N_G42_A43AAAAA00680.16 AA00
445ccb_N_A43_G44AAAAA00860.11 AA00
455ccb_N_G44_G45AAAAA00730.31 AA00
465ccb_N_G45_G46ICLIC01840.19 IC01
475ccb_N_G46_U47NANNANT00.95 OP12
485ccb_N_U47_C48NANNANT00.89 OP01
495ccb_N_C48_C49NANNANT01.60 OP05
505ccb_N_C49_A50AAwAA10130.37 AA10
515ccb_N_A50_G51AAAAA08870.16 AA08
525ccb_N_G51_G52AAAAA00730.17 AA00
535ccb_N_G52_G53AAAAA00390.23 AA00
545ccb_N_G53_U54AAwAA10670.27 AA10
555ccb_N_U54_U55AAuAA12700.42 AA12
565ccb_N_U55_C56NANNANT00.89 OP05
575ccb_N_C56_A57NANNANT01.40 BB2S
585ccb_N_A57_A.A58NANNANT00.94 OPS1
595ccb_N_A57_A.B58NANNANT01.51 IC03
605ccb_N_A.A58_G59NANNANT01.24 AA01
615ccb_N_A.B58_G59NANNANT01.43 AA01
625ccb_N_G59_U60NANNANT01.43 OP18
635ccb_N_U60_C61OPNOP11400.69 OP11
645ccb_N_C61_C62AAAAA00910.18 AA00
655ccb_N_C62_C63AAAAA00940.15 AA00
665ccb_N_C63_U64AAAAA00930.12 AA00
675ccb_N_U64_G65AAAAA00950.10 AA00
685ccb_N_G65_U66AAAAA00850.15 AA00
695ccb_N_U66_U67AAAAA00740.24 AA00
705ccb_N_U67_C68AAAAA00720.27 AA00
715ccb_N_C68_G69AAAAA00540.22 AA00
725ccb_N_G69_G70AAAAA00780.18 AA00
735ccb_N_G70_G71AAAAA00900.15 AA00
745ccb_N_G71_C72AAAAA00840.24 AA00
755ccb_N_C72_G73NANNANT00.48 AA05
765ccb_N_G73_C74NANNANT00.76 AB2S
775ccb_N_C74_C75NANNANT01.83 ZZS2
785ccb_N_C75_A76NANNANT00.62 AA03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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