Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
AncGR2 DNA Binding Domain - (+)GRE Complex

Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
015cby_C_DC1_DC2BBBBB00950.10 BB00
025cby_C_DC2_DA3B12BB04820.22 BB04
035cby_C_DA3_DG4BBBBB00870.15 BB00
045cby_C_DG4_DA5B12BB04220.22 BB04
055cby_C_DA5_DA6BBBBB00820.10 BB00
065cby_C_DA6_DC7BBBBB00750.14 BB00
075cby_C_DC7_DA8BBBBB00880.13 BB00
085cby_C_DA8_DG9B12BB04130.23 BB04
095cby_C_DG9_DA10BBBBB00570.25 BB00
105cby_C_DA10_DG11BBBBB00830.13 BB00
115cby_C_DG11_DT12BBBBB01840.15 BB01
125cby_C_DT12_DG13BBBBB00280.21 BB00
135cby_C_DG13_DT14B12BB04130.21 BB04
145cby_C_DT14_DT15BBBBB00600.14 BB00
155cby_C_DT15_DC16BBBBB00650.14 BB00
165cby_C_DC16_DT17BBBBB01730.15 BB01
175cby_C_DT17_DG18BBBBB00430.34 BB00
185cby_D_DT1_DC2NANNANT00.72 BB16
195cby_D_DC2_DA3B12BB04660.23 BB04
205cby_D_DA3_DG4B-ABA05730.25 BA05
215cby_D_DG4_DA5A-BAB03500.37 AB03
225cby_D_DA5_DA6BBBBB00650.26 BB00
235cby_D_DA6_DC7B12BB04310.19 BB04
245cby_D_DC7_DA8BBBBB00830.17 BB00
255cby_D_DA8_DC9NANNANT00.35 BB00
265cby_D_DC9_DT10BBBBB00300.33 BB00
275cby_D_DT10_DC11BBBBB00850.12 BB00
285cby_D_DC11_DT12BBBBB01640.13 BB01
295cby_D_DT12_DG13BBBBB00130.20 BB00
305cby_D_DG13_DT14B12BB04830.15 BB04
315cby_D_DT14_DT15BBBBB00920.13 BB00
325cby_D_DT15_DC16BBwBB02510.22 BB02
335cby_D_DC16_DT17BBBBB00120.26 BB00
345cby_D_DT17_DG18BBBBB00740.22 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N