Conformers:
ABBIImiBZICOPNSYNN
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Structure of a 12-subunit nuclear exosome complex bound to structured RNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 5c0x_R_C-44_C-43 | AAA | AA00 | 7 | 0.43 |
| 02 | 5c0x_R_C-43_C-42 | AAA | AA04 | 62 | 0.41 |
| 03 | 5c0x_R_C-42_C-41 | AAA | AA04 | 68 | 0.39 |
| 04 | 5c0x_R_C-41_G-40 | AAw | AA01 | 13 | 0.51 |
| 05 | 5c0x_R_G-40_A-39 | NAN | NANT | 0 | 0.97 |
| 06 | 5c0x_R_A-39_G-38 | NAN | NANT | 0 | 1.04 |
| 07 | 5c0x_R_G-38_A-37 | NAN | NANT | 0 | 0.59 |
| 08 | 5c0x_R_A-37_G-36 | NAN | NANT | 0 | 1.69 |
| 09 | 5c0x_R_G-36_G-35 | AAA | AA00 | 60 | 0.26 |
| 10 | 5c0x_R_G-35_G-34 | AAA | AA00 | 15 | 0.30 |
| 11 | 5c0x_R_G-34_G-33 | AAw | AA10 | 13 | 0.30 |
| 12 | 5c0x_R_G-33_G-32 | NAN | NANT | 0 | 0.71 |
| 13 | 5c0x_R_G-32_U-31 | NAN | NANT | 0 | 0.96 |
| 14 | 5c0x_R_U-6_U-5 | AAu | AA13 | 61 | 0.38 |
| 15 | 5c0x_R_U-5_U-4 | AAA | AA00 | 85 | 0.19 |
| 16 | 5c0x_R_U-4_U-3 | AAA | AA00 | 65 | 0.25 |
| 17 | 5c0x_R_U-3_U-2 | AAA | AA00 | 69 | 0.14 |
| 18 | 5c0x_R_U-2_U-1 | AAw | AA01 | 87 | 0.17 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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