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Conformers: ABBIImiBZICOPNSYNN
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Structure of a 12-subunit nuclear exosome complex bound to single-stranded RNA substrates

Results of the assignment of 11 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
015c0w_R_A-7_A-6NANNANT00.95 OP06
025c0w_R_A-6_A-5NANNANT00.71 OP15
035c0w_R_A-5_A-4AAAAA00590.29 AA00
045c0w_R_A-4_A-3AAAAA03280.34 AA03
055c0w_R_A-3_A-2AAAAA03150.33 AA03
065c0w_R_A-2_A-1NANNANT00.74 AA05
075c0w_N_A-13_U-12NANNANT01.02 IC03
085c0w_N_U-12_A-11NANNANT00.83 OP08
095c0w_N_A-11_A-10NANNANT00.79 OP06
105c0w_N_A-10_A-9AAAAA04230.59 AA04
115c0w_N_A-9_U-8NANNANT00.72 OP31

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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