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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of a topoisomerase II complex

Results of the assignment of 72 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
015bti_E_DT.A3_DC.A4miBBB15310.32 BB15
025bti_E_DC.A4_DA.A5NANNANT00.46 BA05
035bti_E_DA.A5_DT.A6AAAAA02630.34 AA02
045bti_E_DT.A6_DG.A7NANNANT00.47 IC06
055bti_E_DG.A7_DA.A8BB2BB08880.30 BB08
065bti_E_DA.A8_DA.A9B-ABA10330.48 BA10
075bti_E_DA.A9_DT.A10A-BAB05290.24 AB05
085bti_E_DG.A11_DA.A12B12BB04770.28 BB04
095bti_E_DA.A12_DC.A13BBBBB00880.15 BB00
105bti_E_DC.A13_DT.A14B-ABA01140.29 BA01
115bti_E_DT.A14_DA.A15NANNANT00.44 AB04
125bti_E_DA.A15_DT.A16NANNANT00.46 BA09
135bti_E_DT.A16_DG.A17A-BAB05660.34 AB05
145bti_E_DG.A17_DC.A18B-ABA05270.43 BA05
155bti_E_DC.A18_DA.A19NANNANT00.32 AB01
165bti_E_DA.A19_DC.A20BBBBB01830.16 BB01
175bti_E_DC.A20_DG.A21AAAAA02300.40 AA02
185bti_E_DG.A21_DT.A22NANNANT00.43 AA04
195bti_F_DA.A3_DC.A4B-ABA08480.36 BA08
205bti_F_DC.A4_DG.A5AAAAA02340.33 AA02
215bti_F_DG.A5_DT.A6AAAAA02560.38 AA02
225bti_F_DT.A6_DG.A7NANNANT00.51 IC06
235bti_F_DG.A7_DC.A8B12BB04870.17 BB04
245bti_F_DC.A8_DA.A9B-ABA10730.26 BA10
255bti_F_DA.A9_DT.A10AAAAA00560.22 AA00
265bti_F_DA.A11_DG.A12B12BB04800.28 BB04
275bti_F_DG.A12_DT.A13BBBBB00810.14 BB00
285bti_F_DT.A13_DC.A14B-ABA05420.34 BA05
295bti_F_DC.A14_DA.A15NANNANT00.47 AB04
305bti_F_DA.A15_DT.A16NANNANT00.41 BA09
315bti_F_DT.A16_DT.A17A-BAB05680.34 AB05
325bti_F_DT.A17_DC.A18B-ABA05240.47 BA05
335bti_F_DC.A18_DA.A19NANNANT00.32 AB01
345bti_F_DA.A19_DT.A20BBBBB01650.19 BB01
355bti_F_DT.A20_DG.A21B-ABA05410.39 BA05
365bti_F_DG.A21_DA.A22NANNANT00.43 AA04
375bti_G_DA.B3_DC.B4NANNANT00.28 BB15
385bti_G_DC.B4_DG.B5NANNANT00.43 BA05
395bti_G_DG.B5_DT.B6AAAAA02600.36 AA02
405bti_G_DT.B6_DG.B7NANNANT00.43 IC06
415bti_G_DG.B7_DC.B8BBwBB11280.27 BB11
425bti_G_DC.B8_DA.B9B-ABA10790.38 BA10
435bti_G_DA.B9_DT.B10AAAAA00560.22 AA00
445bti_G_DA.B11_DG.B12B12BB04820.26 BB04
455bti_G_DG.B12_DT.B13BBBBB00790.16 BB00
465bti_G_DT.B13_DC.B14B-ABA05450.31 BA05
475bti_G_DC.B14_DA.B15NANNANT00.46 AB04
485bti_G_DA.B15_DT.B16NANNANT00.40 BA09
495bti_G_DT.B16_DT.B17A-BAB05620.37 AB05
505bti_G_DT.B17_DC.B18B-ABA05240.46 BA05
515bti_G_DC.B18_DA.B19NANNANT00.33 AB01
525bti_G_DA.B19_DT.B20BBBBB01650.19 BB01
535bti_G_DT.B20_DG.B21AAAAA02480.40 AA02
545bti_G_DG.B21_DA.B22NANNANT00.45 AA04
555bti_H_DT.B3_DC.B4BBBBB00170.35 BB00
565bti_H_DC.B4_DA.B5AAAAA02180.30 AA02
575bti_H_DA.B5_DT.B6AAAAA02660.32 AA02
585bti_H_DT.B6_DG.B7NANNANT00.44 BB16
595bti_H_DG.B7_DA.B8BB2BB07680.23 BB07
605bti_H_DA.B8_DA.B9B-ABA10400.35 BA10
615bti_H_DA.B9_DT.B10A-BAB05270.24 AB05
625bti_H_DG.B11_DA.B12B12BB04770.28 BB04
635bti_H_DA.B12_DC.B13BBBBB00860.15 BB00
645bti_H_DC.B13_DT.B14B-ABA01110.28 BA01
655bti_H_DT.B14_DA.B15NANNANT00.43 AB04
665bti_H_DA.B15_DT.B16NANNANT00.43 BA09
675bti_H_DT.B16_DG.B17A-BAB05580.38 AB05
685bti_H_DG.B17_DC.B18B-ABA05280.41 BA05
695bti_H_DC.B18_DA.B19NANNANT00.35 AB01
705bti_H_DA.B19_DC.B20BBBBB01860.16 BB01
715bti_H_DC.B20_DG.B21B-ABA05360.38 BA05
725bti_H_DG.B21_DT.B22NANNANT00.43 AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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