Conformers:
ABBIImiBZICOPNSYNN
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monomer of TALE type homeobox transcription factor MEIS1 complexes with specific DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 39 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 5bng_L_DT26_DT27 | BBB | BB00 | 58 | 0.29 |
| 02 | 5bng_L_DT27_DA28 | BBB | BB00 | 82 | 0.31 |
| 03 | 5bng_L_DA28_DG29 | B-A | BA05 | 87 | 0.26 |
| 04 | 5bng_L_DG29_DC30 | BBB | BB00 | 53 | 0.32 |
| 05 | 5bng_L_DC30_DT31 | BBB | BB01 | 50 | 0.24 |
| 06 | 5bng_L_DT31_DG32 | BBB | BB01 | 67 | 0.23 |
| 07 | 5bng_L_DG32_DT33 | BBB | BB00 | 75 | 0.23 |
| 08 | 5bng_L_DT33_DC34 | B12 | BB04 | 33 | 0.26 |
| 09 | 5bng_L_DC34_DA35 | BBB | BB00 | 52 | 0.43 |
| 10 | 5bng_M_DT4_DG5 | B-A | BA08 | 63 | 0.28 |
| 11 | 5bng_M_DG5_DA6 | NAN | NANT | 0 | 0.31 |
| 12 | 5bng_M_DA6_DC7 | A-B | AB05 | 45 | 0.21 |
| 13 | 5bng_M_DC7_DA8 | B12 | BB04 | 76 | 0.35 |
| 14 | 5bng_M_DA8_DG9 | BBB | BB00 | 87 | 0.18 |
| 15 | 5bng_M_DG9_DC10 | BBB | BB00 | 64 | 0.25 |
| 16 | 5bng_M_DC10_DT11 | BBB | BB00 | 66 | 0.23 |
| 17 | 5bng_M_DT11_DA12 | BBB | BB00 | 66 | 0.34 |
| 18 | 5bng_M_DA12_DA13 | B12 | BB04 | 77 | 0.26 |
| 19 | 5bng_M_DC15_DG16 | NAN | NANT | 0 | 1.04 |
| 20 | 5bng_C_DG24_DA25 | NAN | NANT | 0 | 1.02 |
| 21 | 5bng_C_DA25_DT26 | NAN | NANT | 0 | 1.11 |
| 22 | 5bng_C_DT26_DT27 | NAN | NANT | 0 | 0.71 |
| 23 | 5bng_C_DT27_DA28 | A-B | AB05 | 28 | 0.52 |
| 24 | 5bng_C_DA28_DG29 | BBB | BB01 | 78 | 0.20 |
| 25 | 5bng_C_DG29_DC30 | BBB | BB00 | 57 | 0.31 |
| 26 | 5bng_C_DC30_DT31 | BBB | BB01 | 64 | 0.24 |
| 27 | 5bng_C_DT31_DG32 | BBB | BB01 | 62 | 0.21 |
| 28 | 5bng_C_DG32_DT33 | B-A | BA01 | 31 | 0.30 |
| 29 | 5bng_C_DT33_DC34 | A-B | AB01 | 47 | 0.30 |
| 30 | 5bng_C_DC34_DA35 | BBB | BB00 | 52 | 0.35 |
| 31 | 5bng_D_DT4_DG5 | A-B | AB01 | 81 | 0.18 |
| 32 | 5bng_D_DG5_DA6 | BBB | BB00 | 89 | 0.16 |
| 33 | 5bng_D_DA6_DC7 | BBB | BB00 | 64 | 0.39 |
| 34 | 5bng_D_DC7_DA8 | B12 | BB04 | 71 | 0.30 |
| 35 | 5bng_D_DA8_DG9 | BBB | BB00 | 79 | 0.13 |
| 36 | 5bng_D_DG9_DC10 | BBB | BB00 | 81 | 0.20 |
| 37 | 5bng_D_DC10_DT11 | BBB | BB00 | 57 | 0.27 |
| 38 | 5bng_D_DT11_DA12 | NAN | NANT | 0 | 0.41 |
| 39 | 5bng_D_DA12_DA13 | BBB | BB00 | 79 | 0.28 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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