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Conformers: ABBIImiBZICOPNSYNN
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Human nucleosome containing CpG methylated DNA

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0015b2j_I_DA-72_DT-71A-BAB04280.32 AB04
0025b2j_I_DT-71_DC-70BBBBB01340.25 BB01
0035b2j_I_DC-70_DA-69A-BAB03890.22 AB03
0045b2j_I_DA-69_DA-68B12BB04640.17 BB04
0055b2j_I_DA-68_DT-67B-ABA01190.22 BA01
0065b2j_I_DT-67_DA-66A-BAB01380.40 AB01
0075b2j_I_DA-66_DT-65BBBBB00930.14 BB00
0085b2j_I_DT-65_DC-64B-ABA08500.35 BA08
0095b2j_I_DC-64_DC-63A-BAB03820.34 AB03
0105b2j_I_DC-63_DA-62B12BB04230.23 BB04
0115b2j_I_DA-62_5CM-61B-ABA01650.26 BA01
0125b2j_I_5CM-61_DG-60A-BAB01920.19 AB01
0135b2j_I_DG-60_DT-59B-ABA01540.16 BA01
0145b2j_I_DT-59_DG-58NANNANT00.40 AB03
0155b2j_I_DG-58_DC-57BBBBB00630.17 BB00
0165b2j_I_DC-57_DC-56BB2BB0760.30 BB07
0175b2j_I_DC-56_DA-55B12BB04320.45 BB04
0185b2j_I_DA-55_DG-54BBBBB00220.34 BB00
0195b2j_I_DG-54_DT-53BBBBB01420.23 BB01
0205b2j_I_DT-53_DT-52BBBBB01730.17 BB01
0215b2j_I_DT-52_DA-51BBBBB00850.26 BB00
0225b2j_I_DA-51_DT-50B-ABA08880.18 BA08
0235b2j_I_DT-50_DA-49A-BAB01730.24 AB01
0245b2j_I_DA-49_DC-48miBBB10860.23 BB10
0255b2j_I_DC-48_DC-47NANNANT00.36 BB00
0265b2j_I_DC-47_DA-46BB2BB07210.38 BB07
0275b2j_I_DA-46_DA-45miBBB10480.37 BB10
0285b2j_I_DA-45_DA-44NANNANT00.32 BB05
0295b2j_I_DA-44_DA-43BBBBB00200.35 BB00
0305b2j_I_DA-43_DG-42BBBBB00670.16 BB00
0315b2j_I_DG-42_DT-41BBBBB00830.15 BB00
0325b2j_I_DT-41_DG-40BBBBB01770.14 BB01
0335b2j_I_DG-40_DT-39B-ABA05540.32 BA05
0345b2j_I_DT-39_DA-38A-BAB01830.19 AB01
0355b2j_I_DA-38_DT-37BBBBB01490.24 BB01
0365b2j_I_DT-37_DT-36BBBBB01500.28 BB01
0375b2j_I_DT-36_DT-35BBBBB00300.19 BB00
0385b2j_I_DT-35_DG-34BB2BB07410.30 BB07
0395b2j_I_DG-34_DG-33BBBBB00690.35 BB00
0405b2j_I_DG-33_DA-32BB2BB07640.45 BB07
0415b2j_I_DA-32_DA-31B-ABA05610.19 BA05
0425b2j_I_DA-31_DA-30NANNANT00.52 AA04
0435b2j_I_DA-30_DC-29AAAAA00530.49 AA00
0445b2j_I_DC-29_DT-28A-BAB01150.32 AB01
0455b2j_I_DT-28_DC-27BBBBB00730.22 BB00
0465b2j_I_DC-27_DC-26BBBBB00620.37 BB00
0475b2j_I_DC-26_DT-25BB2BB08440.45 BB08
0485b2j_I_DT-25_DA-24BBBBB00390.57 BB00
0495b2j_I_DA-24_DA-23BB2BB07790.19 BB07
0505b2j_I_DA-23_DC-22BBBBB00490.23 BB00
0515b2j_I_DC-22_DT-21BBBBB00610.21 BB00
0525b2j_I_DT-21_DG-20BBBBB00310.20 BB00
0535b2j_I_DG-20_DA-19B12BB04660.31 BB04
0545b2j_I_DA-19_DA-18BBBBB00560.39 BB00
0555b2j_I_DA-18_DA-17B12BB04620.21 BB04
0565b2j_I_DA-17_DA-16BBBBB00530.33 BB00
0575b2j_I_DA-16_DG-15B12BB04800.30 BB04
0585b2j_I_DG-15_DG-14BB2BB07730.28 BB07
0595b2j_I_DG-14_DC-13BBBBB00700.24 BB00
0605b2j_I_DC-13_DA-12B12BB04770.24 BB04
0615b2j_I_DA-12_DT-11BBBBB01170.27 BB01
0625b2j_I_DT-11_DG-10A-BAB03890.21 AB03
0635b2j_I_DG-10_DT-9BBBBB00800.25 BB00
0645b2j_I_DT-9_DT-8BBBBB00590.20 BB00
0655b2j_I_DT-8_DC-7BBBBB00720.23 BB00
0665b2j_I_DC-7_DA-6BB2BB07740.30 BB07
0675b2j_I_DA-6_5CM-5BBBBB00510.24 BB00
0685b2j_I_5CM-5_DG-4BB2BB07360.28 BB07
0695b2j_I_DG-4_DT-3B12BB04640.25 BB04
0705b2j_I_DT-3_DG-2B12BB04630.28 BB04
0715b2j_I_DG-2_DA-1miBBB10440.33 BB10
0725b2j_I_DA-1_DA0BBBBB01710.15 BB01
0735b2j_I_DA0_DT1BBBBB00270.19 BB00
0745b2j_I_DT1_DT2BBwBB02710.27 BB02
0755b2j_I_DT2_DC3BBBBB00590.24 BB00
0765b2j_I_DC3_DA4BB2BB07850.19 BB07
0775b2j_I_DA4_5CM5NANNANT00.36 BB10
0785b2j_I_5CM5_DG6BB2BB07680.27 BB07
0795b2j_I_DG6_DT7B-ABA08660.35 BA08
0805b2j_I_DT7_DG8A-BAB03700.38 AB03
0815b2j_I_DG8_DA9BBBBB00910.16 BB00
0825b2j_I_DA9_DA10BBBBB00940.08 BB00
0835b2j_I_DA10_DC11BBBBB00610.19 BB00
0845b2j_I_DC11_DA12B12BB04860.14 BB04
0855b2j_I_DA12_DT13BBBBB01770.16 BB01
0865b2j_I_DT13_DG14BBBBB00580.24 BB00
0875b2j_I_DG14_DC15BB2BB07510.26 BB07
0885b2j_I_DC15_DC16B12BB04540.39 BB04
0895b2j_I_DC16_DT17B-ABA17780.28 BA17
0905b2j_I_DT17_DT18BBBBB01610.22 BB01
0915b2j_I_DT18_DT19BBBBB00230.23 BB00
0925b2j_I_DT19_DT20BBBBB00390.33 BB00
0935b2j_I_DT20_DC21B-ABA01720.18 BA01
0945b2j_I_DC21_DA22AAAAA00210.38 AA00
0955b2j_I_DA22_DG23A-BAB01780.20 AB01
0965b2j_I_DG23_DT24BBBBB00610.34 BB00
0975b2j_I_DT24_DT25BBBBB00870.16 BB00
0985b2j_I_DT25_DA26BB2BB07780.25 BB07
0995b2j_I_DA26_DG27BBBBB00690.32 BB00
1005b2j_I_DG27_DG28BB2BB07660.20 BB07
1015b2j_I_DG28_DA29BBBBB00840.19 BB00
1025b2j_I_DA29_DG30B12BB04470.10 BB04
1035b2j_I_DG30_DT31BBBBB01290.29 BB01
1045b2j_I_DT31_DT32BBBBB01540.17 BB01
1055b2j_I_DT32_DT33BBBBB01570.23 BB01
1065b2j_I_DT33_DC34BBBBB00900.26 BB00
1075b2j_I_DC34_DC35BB2BB07780.16 BB07
1085b2j_I_DC35_DA36B12BB04490.38 BB04
1095b2j_I_DA36_DA37BBBBB00910.13 BB00
1105b2j_I_DA37_DA38B-ABA08860.20 BA08
1115b2j_I_DA38_DT39A-BAB05660.25 AB05
1125b2j_I_DT39_DA40BBwBB02550.42 BB02
1135b2j_I_DA40_DC41B-ABA09240.43 BA09
1145b2j_I_DC41_DA42A-BAB03160.42 AB03
1155b2j_I_DA42_DC43B-ABA01710.26 BA01
1165b2j_I_DC43_DT44A-BAB01230.36 AB01
1175b2j_I_DT44_DT45BBBBB01550.20 BB01
1185b2j_I_DT45_DT46BBBBB00650.22 BB00
1195b2j_I_DT46_DT47B-ABA17570.28 BA17
1205b2j_I_DT47_DG48A-BAB01150.25 AB01
1215b2j_I_DG48_DG49B12BB04250.24 BB04
1225b2j_I_DG49_DT50BBBBB01790.16 BB01
1235b2j_I_DT50_DA51BBBBB00290.23 BB00
1245b2j_I_DA51_DT52B-ABA08490.31 BA08
1255b2j_I_DT52_DA53A-BAB03550.36 AB03
1265b2j_I_DA53_DA54BBBBB00640.29 BB00
1275b2j_I_DA54_DC55B-ABA05580.32 BA05
1285b2j_I_DC55_DT56A-BAB01170.33 AB01
1295b2j_I_DT56_DG57BB2BB07270.30 BB07
1305b2j_I_DG57_DG58BB2BB07550.16 BB07
1315b2j_I_DG58_DC59BBBBB00700.17 BB00
1325b2j_I_DC59_DA60B12BB04920.12 BB04
1335b2j_I_DA60_5CM61BBBBB01680.20 BB01
1345b2j_I_5CM61_DG62BBBBB00360.36 BB00
1355b2j_I_DG62_DT63B-ABA01470.23 BA01
1365b2j_I_DT63_DG64A-BAB01810.19 AB01
1375b2j_I_DG64_DG65BBBBB00540.32 BB00
1385b2j_I_DG65_DA66B12BB04450.29 BB04
1395b2j_I_DA66_DT67BBBBB00790.22 BB00
1405b2j_I_DT67_DA68BBBBB00550.25 BB00
1415b2j_I_DA68_DT69BBBBB00760.23 BB00
1425b2j_I_DT69_DT70BBBBB00880.17 BB00
1435b2j_I_DT70_DG71BBBBB00610.23 BB00
1445b2j_I_DG71_DA72B12BB04420.16 BB04
1455b2j_I_DA72_DT73B-ABA05470.23 BA05
1465b2j_J_DA-73_DT-72A-BAB05330.33 AB05
1475b2j_J_DT-72_DC-71NANNANT00.40 BB03
1485b2j_J_DC-71_DA-70NANNANT00.46 AB02
1495b2j_J_DA-70_DA-69BB2BB07440.25 BB07
1505b2j_J_DA-69_DT-68BBBBB0190.27 BB01
1515b2j_J_DT-68_DA-67NANNANT00.41 AB03
1525b2j_J_DA-67_DT-66BBBBB00840.20 BB00
1535b2j_J_DT-66_DC-65BBwBB02240.40 BB02
1545b2j_J_DC-65_DC-64BBBBB00510.41 BB00
1555b2j_J_DC-64_DA-63miBBB10600.20 BB10
1565b2j_J_DA-63_5CM-62B-ABA05700.24 BA05
1575b2j_J_5CM-62_DG-61A-BAB01410.31 AB01
1585b2j_J_DG-61_DT-60BBBBB01270.11 BB01
1595b2j_J_DT-60_DG-59NANNANT00.37 AB03
1605b2j_J_DG-59_DC-58BBBBB00270.37 BB00
1615b2j_J_DC-58_DC-57BB2BB07160.33 BB07
1625b2j_J_DC-57_DA-56B12BB04120.49 BB04
1635b2j_J_DA-56_DG-55B-ABA08660.31 BA08
1645b2j_J_DG-55_DT-54A-BAB03710.23 AB03
1655b2j_J_DT-54_DT-53BBBBB01640.26 BB01
1665b2j_J_DT-53_DA-52BBBBB00370.23 BB00
1675b2j_J_DA-52_DT-51B-ABA08730.28 BA08
1685b2j_J_DT-51_DA-50A-BAB01790.19 AB01
1695b2j_J_DA-50_DC-49miBBB13790.33 BB13
1705b2j_J_DC-49_DC-48NANNANT00.70 BB00
1715b2j_J_DC-48_DA-47BB2BB07260.41 BB07
1725b2j_J_DA-47_DA-46miBBB10530.31 BB10
1735b2j_J_DA-46_DA-45NANNANT00.29 BB05
1745b2j_J_DA-45_DA-44BBBBB00370.47 BB00
1755b2j_J_DA-44_DG-43BBBBB00650.23 BB00
1765b2j_J_DG-43_DT-42BBBBB00310.30 BB00
1775b2j_J_DT-42_DG-41BBBBB00490.27 BB00
1785b2j_J_DG-41_DT-40B-ABA01330.25 BA01
1795b2j_J_DT-40_DA-39A-BAB01840.17 AB01
1805b2j_J_DA-39_DT-38BBBBB00770.23 BB00
1815b2j_J_DT-38_DT-37BBBBB00190.31 BB00
1825b2j_J_DT-37_DT-36A-BAB03820.32 AB03
1835b2j_J_DT-36_DG-35BB2BB07650.32 BB07
1845b2j_J_DG-35_DG-34BBBBB00640.38 BB00
1855b2j_J_DG-34_DA-33BB2BB07650.33 BB07
1865b2j_J_DA-33_DA-32B-ABA05370.31 BA05
1875b2j_J_DA-32_DA-31NANNANT00.51 AB02
1885b2j_J_DA-31_DC-30AAAAA08110.34 AA08
1895b2j_J_DC-30_DT-29A-BAB01590.32 AB01
1905b2j_J_DT-29_DC-28B12BB04640.19 BB04
1915b2j_J_DC-28_DC-27BBBBB00740.32 BB00
1925b2j_J_DC-27_DT-26BB2BB07690.30 BB07
1935b2j_J_DT-26_DA-25BBBBB00500.34 BB00
1945b2j_J_DA-25_DA-24BB2BB07770.15 BB07
1955b2j_J_DA-24_DC-23BBBBB00560.20 BB00
1965b2j_J_DC-23_DT-22miBBB15710.23 BB15
1975b2j_J_DT-22_DG-21BBBBB00110.21 BB00
1985b2j_J_DG-21_DA-20B12BB04110.15 BB04
1995b2j_J_DA-20_DA-19miBBB15170.42 BB15
2005b2j_J_DA-19_DA-18B-ABA08340.27 BA08
2015b2j_J_DA-18_DA-17BBBBB00210.25 BB00
2025b2j_J_DA-17_DG-16B12BB04490.33 BB04
2035b2j_J_DG-16_DG-15BB2BB07750.26 BB07
2045b2j_J_DG-15_DC-14NANNANT00.33 BB11
2055b2j_J_DC-14_DA-13BBBBB00340.40 BB00
2065b2j_J_DA-13_DT-12BBBBB00660.18 BB00
2075b2j_J_DT-12_DG-11BBBBB00510.24 BB00
2085b2j_J_DG-11_DT-10BBBBB00190.29 BB00
2095b2j_J_DT-10_DT-9BBBBB00940.12 BB00
2105b2j_J_DT-9_DC-8BBBBB00610.19 BB00
2115b2j_J_DC-8_DA-7B12BB04850.16 BB04
2125b2j_J_DA-7_5CM-6miBBB10590.20 BB10
2135b2j_J_5CM-6_DG-5BB2BB07460.27 BB07
2145b2j_J_DG-5_DT-4B-ABA17860.16 BA17
2155b2j_J_DT-4_DG-3A-BAB03580.24 AB03
2165b2j_J_DG-3_DA-2BBBBB00710.17 BB00
2175b2j_J_DA-2_DA-1B-ABA08420.32 BA08
2185b2j_J_DA-1_DT0BBBBB01720.17 BB01
2195b2j_J_DT0_DT1BBwBB02440.29 BB02
2205b2j_J_DT1_DC2BBBBB00330.23 BB00
2215b2j_J_DC2_DA3B12BB04890.18 BB04
2225b2j_J_DA3_5CM4B12BB04350.36 BB04
2235b2j_J_5CM4_DG5NANNANT00.29 BB07
2245b2j_J_DG5_DT6NANNANT00.32 BB07
2255b2j_J_DT6_DG7NANNANT00.47 BB08
2265b2j_J_DG7_DA8BBBBB00620.32 BB00
2275b2j_J_DA8_DA9BBBBB00610.18 BB00
2285b2j_J_DA9_DC10BBBBB01580.23 BB01
2295b2j_J_DC10_DA11BBBBB00260.47 BB00
2305b2j_J_DA11_DT12NANNANT00.49 AB03
2315b2j_J_DT12_DG13BBBBB00200.38 BB00
2325b2j_J_DG13_DC14BBBBB00650.33 BB00
2335b2j_J_DC14_DC15BB2BB07220.30 BB07
2345b2j_J_DC15_DT16B-ABA08540.36 BA08
2355b2j_J_DT16_DT17BBBBB01350.33 BB01
2365b2j_J_DT17_DT18BBBBB00820.15 BB00
2375b2j_J_DT18_DT19BBBBB01630.20 BB01
2385b2j_J_DT19_DC20NANNANT00.39 AA01
2395b2j_J_DC20_DA21AAAAA04770.23 AA04
2405b2j_J_DA21_DG22A-BAB05710.23 AB05
2415b2j_J_DG22_DT23NANNANT00.56 BB03
2425b2j_J_DT23_DT24NANNANT00.30 BB03
2435b2j_J_DT24_DA25BB2BB07550.21 BB07
2445b2j_J_DA25_DG26BBBBB00650.33 BB00
2455b2j_J_DG26_DG27BB2BB07880.22 BB07
2465b2j_J_DG27_DA28BBBBB00800.22 BB00
2475b2j_J_DA28_DG29B-ABA08850.28 BA08
2485b2j_J_DG29_DT30A-BAB01400.33 AB01
2495b2j_J_DT30_DT31B-ABA01200.34 BA01
2505b2j_J_DT31_DT32A-BAB01780.21 AB01
2515b2j_J_DT32_DC33BBBBB00850.31 BB00
2525b2j_J_DC33_DC34BB2BB07780.23 BB07
2535b2j_J_DC34_DA35B12BB04500.39 BB04
2545b2j_J_DA35_DA36BBBBB00500.15 BB00
2555b2j_J_DA36_DA37B-ABA08590.24 BA08
2565b2j_J_DA37_DT38A-BAB05650.25 AB05
2575b2j_J_DT38_DA39miBBB15870.26 BB15
2585b2j_J_DA39_DC40NANNANT00.37 BA08
2595b2j_J_DC40_DA41A-BAB01610.23 AB01
2605b2j_J_DA41_DC42BBBBB01660.16 BB01
2615b2j_J_DC42_DT43BBBBB00450.30 BB00
2625b2j_J_DT43_DT44BBBBB00730.21 BB00
2635b2j_J_DT44_DT45BBBBB00840.13 BB00
2645b2j_J_DT45_DT46BB2BB07270.31 BB07
2655b2j_J_DT46_DG47BBBBB00570.42 BB00
2665b2j_J_DG47_DG48BBBBB00970.18 BB00
2675b2j_J_DG48_DT49B-ABA08690.31 BA08
2685b2j_J_DT49_DA50A-BAB03800.33 AB03
2695b2j_J_DA50_DT51B-ABA08640.25 BA08
2705b2j_J_DT51_DA52BBBBB01310.24 BB01
2715b2j_J_DA52_DA53B-ABA05410.34 BA05
2725b2j_J_DA53_DC54AAAAA02400.50 AA02
2735b2j_J_DC54_DT55A-BAB03850.32 AB03
2745b2j_J_DT55_DG56BB2BB07590.37 BB07
2755b2j_J_DG56_DG57B12BB04420.30 BB04
2765b2j_J_DG57_DC58BBBBB00670.24 BB00
2775b2j_J_DC58_DA59B12BB04870.19 BB04
2785b2j_J_DA59_5CM60B-ABA08730.36 BA08
2795b2j_J_5CM60_DG61NANNANT00.37 AB03
2805b2j_J_DG61_DT62BBBBB01210.24 BB01
2815b2j_J_DT62_DG63A-BAB01110.39 AB01
2825b2j_J_DG63_DG64miBBB10380.20 BB10
2835b2j_J_DG64_DA65B12BB04600.21 BB04
2845b2j_J_DA65_DT66BBBBB00690.32 BB00
2855b2j_J_DT66_DA67BBBBB00640.22 BB00
2865b2j_J_DA67_DT68BBBBB00420.18 BB00
2875b2j_J_DT68_DT69BBBBB00130.17 BB00
2885b2j_J_DT69_DG70BBBBB00790.20 BB00
2895b2j_J_DG70_DA71miBBB10260.45 BB10
2905b2j_J_DA71_DT72BBBBB01530.30 BB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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