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Conformers: ABBIImiBZICOPNSYNN
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The mouse nucleosome structure containing H3.1

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0015b1m_I_DA1_DT2NANNANT01.47 BB07
0025b1m_I_DT2_DC3BBBBB00250.30 BB00
0035b1m_I_DC3_DA4B12BB04690.20 BB04
0045b1m_I_DA4_DA5BBBBB00190.23 BB00
0055b1m_I_DA5_DT6BBBBB01700.20 BB01
0065b1m_I_DT6_DA7BBBBB01740.26 BB01
0075b1m_I_DA7_DT8BBBBB00790.22 BB00
0085b1m_I_DT8_DC9BBBBB00680.14 BB00
0095b1m_I_DC9_DC10BBBBB00220.34 BB00
0105b1m_I_DC10_DA11miBBB10220.39 BB10
0115b1m_I_DA11_DC12NANNANT00.44 BA05
0125b1m_I_DC12_DC13NANNANT00.44 AB04
0135b1m_I_DC13_DT14NANNANT00.46 AB04
0145b1m_I_DT14_DG15BB2BB07630.33 BB07
0155b1m_I_DG15_DC16B12BB04150.37 BB04
0165b1m_I_DC16_DA17BB2BB07650.29 BB07
0175b1m_I_DA17_DG18BBBBB01100.35 BB01
0185b1m_I_DG18_DA19BBBBB01760.25 BB01
0195b1m_I_DA19_DT20BBBBB01700.15 BB01
0205b1m_I_DT20_DT21BBBBB01910.13 BB01
0215b1m_I_DT21_DC22BBBBB00590.16 BB00
0225b1m_I_DC22_DT23miBBB10510.28 BB10
0235b1m_I_DT23_DA24B12BB04380.22 BB04
0245b1m_I_DA24_DC25B12BB04960.14 BB04
0255b1m_I_DC25_DC26BBBBB00910.15 BB00
0265b1m_I_DC26_DA27BB2BB07830.26 BB07
0275b1m_I_DA27_DA28BBBBB00740.23 BB00
0285b1m_I_DA28_DA29BB2BB08490.33 BB08
0295b1m_I_DA29_DA30BBBBB00560.30 BB00
0305b1m_I_DA30_DG31BBBBB00910.17 BB00
0315b1m_I_DG31_DT32BBBBB00910.17 BB00
0325b1m_I_DT32_DG33B12BB04610.33 BB04
0335b1m_I_DG33_DT34BBBBB00750.22 BB00
0345b1m_I_DT34_DA35B12BB04660.21 BB04
0355b1m_I_DA35_DT36BBBBB01770.17 BB01
0365b1m_I_DT36_DT37BBBBB00350.23 BB00
0375b1m_I_DT37_DT38miBBB15850.22 BB15
0385b1m_I_DT38_DG39BB2BB07220.36 BB07
0395b1m_I_DG39_DG40BB2BB08500.34 BB08
0405b1m_I_DG40_DA41B12BB04500.42 BB04
0415b1m_I_DA41_DA42BBBBB00730.20 BB00
0425b1m_I_DA42_DA43BBBBB00420.25 BB00
0435b1m_I_DA43_DC44BBBBB00820.23 BB00
0445b1m_I_DC44_DT45B-ABA09580.30 BA09
0455b1m_I_DT45_DG46BBwBB16490.22 BB16
0465b1m_I_DG46_DC47BB2BB08550.29 BB08
0475b1m_I_DC47_DT48NANNANT00.48 BB17
0485b1m_I_DT48_DC49BB2BB07690.19 BB07
0495b1m_I_DC49_DC50B12BB04760.19 BB04
0505b1m_I_DC50_DA51BBBBB00600.29 BB00
0515b1m_I_DA51_DT52B-ABA10360.22 BA10
0525b1m_I_DT52_DC53NANNANT00.47 AA03
0535b1m_I_DC53_DA54BBBBB01510.32 BB01
0545b1m_I_DA54_DA55BBBBB00320.55 BB00
0555b1m_I_DA55_DA56B12BB04320.36 BB04
0565b1m_I_DA56_DA57B12BB04440.32 BB04
0575b1m_I_DA57_DG58miBBB13640.47 BB13
0585b1m_I_DG58_DG59B12BB04200.48 BB04
0595b1m_I_DG59_DC60B12BB04800.18 BB04
0605b1m_I_DC60_DA61BBBBB00670.34 BB00
0615b1m_I_DA61_DT62BBBBB00760.14 BB00
0625b1m_I_DT62_DG63B12BB04820.27 BB04
0635b1m_I_DG63_DT64BBBBB00700.27 BB00
0645b1m_I_DT64_DT65BBBBB00530.23 BB00
0655b1m_I_DT65_DC66BBBBB00700.22 BB00
0665b1m_I_DC66_DA67BB2BB07760.27 BB07
0675b1m_I_DA67_DG68BBBBB00710.27 BB00
0685b1m_I_DG68_DC69BB2BB07630.21 BB07
0695b1m_I_DC69_DT70BBBBB00800.25 BB00
0705b1m_I_DT70_DG71BBBBB00510.21 BB00
0715b1m_I_DG71_DA72BBBBB00670.34 BB00
0725b1m_I_DA72_DA73BBBBB00500.17 BB00
0735b1m_I_DA73_DT74BBBBB01870.15 BB01
0745b1m_I_DT74_DT75BBBBB00460.27 BB00
0755b1m_I_DT75_DC76BBBBB00680.27 BB00
0765b1m_I_DC76_DA77BB2BB07890.17 BB07
0775b1m_I_DA77_DG78miBBB15300.40 BB15
0785b1m_I_DG78_DC79BB2BB07930.25 BB07
0795b1m_I_DC79_DT80BBBBB00540.29 BB00
0805b1m_I_DT80_DG81B12BB04880.20 BB04
0815b1m_I_DG81_DA82BBBBB00900.17 BB00
0825b1m_I_DA82_DA83BBBBB00940.12 BB00
0835b1m_I_DA83_DC84NANNANT00.36 BA08
0845b1m_I_DC84_DA85A-BAB01350.22 AB01
0855b1m_I_DA85_DT86BBBBB00730.20 BB00
0865b1m_I_DT86_DG87BBBBB00800.25 BB00
0875b1m_I_DG87_DC88BB2BB07520.31 BB07
0885b1m_I_DC88_DC89BBBBB00390.32 BB00
0895b1m_I_DC89_DT90BB2BB07550.28 BB07
0905b1m_I_DT90_DT91BBBBB01860.14 BB01
0915b1m_I_DT91_DT92miBBB15760.24 BB15
0925b1m_I_DT92_DT93miBBB15720.21 BB15
0935b1m_I_DT93_DG94BBBBB00530.31 BB00
0945b1m_I_DG94_DA95miBBB10520.29 BB10
0955b1m_I_DA95_DT96BBBBB00560.23 BB00
0965b1m_I_DT96_DG97B12BB04910.19 BB04
0975b1m_I_DG97_DG98BBBBB00900.19 BB00
0985b1m_I_DG98_DA99BB2BB07510.29 BB07
0995b1m_I_DA99_DG100BBBBB00450.39 BB00
1005b1m_I_DG100_DC101BB2BB07270.23 BB07
1015b1m_I_DC101_DA102BBBBB00600.28 BB00
1025b1m_I_DA102_DG103miBBB10390.28 BB10
1035b1m_I_DG103_DT104B-ABA05390.30 BA05
1045b1m_I_DT104_DT105BBBBB00120.40 BB00
1055b1m_I_DT105_DT106BBBBB00350.27 BB00
1065b1m_I_DT106_DC107miBBB15420.34 BB15
1075b1m_I_DC107_DC108NANNANT00.34 BB08
1085b1m_I_DC108_DA109BB2BB07580.40 BB07
1095b1m_I_DA109_DA110BBBBB00750.18 BB00
1105b1m_I_DA110_DA111B-ABA08740.20 BA08
1115b1m_I_DA111_DT112A-BAB01490.23 AB01
1125b1m_I_DT112_DA113BBBBB00470.30 BB00
1135b1m_I_DA113_DC114BBBBB00270.18 BB00
1145b1m_I_DC114_DA115B12BB04760.20 BB04
1155b1m_I_DA115_DC116NANNANT00.44 BB02
1165b1m_I_DC116_DT117BBBBB00560.30 BB00
1175b1m_I_DT117_DT118BBwBB02290.40 BB02
1185b1m_I_DT118_DT119B-ABA05280.34 BA05
1195b1m_I_DT119_DT120BBBBB00250.25 BB00
1205b1m_I_DT120_DG121B12BB04640.32 BB04
1215b1m_I_DG121_DG122BBBBB00740.26 BB00
1225b1m_I_DG122_DT123miBBB15540.22 BB15
1235b1m_I_DT123_DA124BBBBB00700.22 BB00
1245b1m_I_DA124_DG125NANNANT00.41 BA13
1255b1m_I_DG125_DA126BBwBB16370.63 BB16
1265b1m_I_DA126_DA127BBBBB00800.18 BB00
1275b1m_I_DA127_DT128BBBBB01190.31 BB01
1285b1m_I_DT128_DC129BBwBB11360.32 BB11
1295b1m_I_DC129_DT130NANNANT00.73 IC04
1305b1m_I_DT130_DG131miBBB10160.40 BB10
1315b1m_I_DG131_DC132NANNANT00.37 BB07
1325b1m_I_DC132_DA133BBBBB00810.30 BB00
1335b1m_I_DA133_DG134NANNANT00.63 BB10
1345b1m_I_DG134_DG135B-ABA08360.76 BA08
1355b1m_I_DG135_DT136NANNANT00.71 BB12
1365b1m_I_DT136_DG137NANNANT01.41 BB13
1375b1m_I_DG137_DG138BB2BB07240.29 BB07
1385b1m_I_DG138_DA139NANNANT00.53 BB02
1395b1m_I_DA139_DT140NANNANT00.43 BB01
1405b1m_I_DT140_DA141BBBBB00790.18 BB00
1415b1m_I_DA141_DT142BBBBB00560.21 BB00
1425b1m_I_DT142_DT143BBBBB00330.23 BB00
1435b1m_I_DT143_DG144BBBBB00470.46 BB00
1445b1m_I_DG144_DA145BBBBB00530.22 BB00
1455b1m_I_DA145_DT146B12BB05380.46 BB05
1465b1m_J_DA147_DT148NANNANT01.00 ZZS1
1475b1m_J_DT148_DC149NANNANT00.43 BB02
1485b1m_J_DC149_DA150B12BB04660.26 BB04
1495b1m_J_DA150_DA151B12BB04800.24 BB04
1505b1m_J_DA151_DT152BBBBB00840.20 BB00
1515b1m_J_DT152_DA153BBBBB00690.20 BB00
1525b1m_J_DA153_DT154BBBBB00550.30 BB00
1535b1m_J_DT154_DC155BBBBB00740.23 BB00
1545b1m_J_DC155_DC156BBBBB00840.22 BB00
1555b1m_J_DC156_DA157NANNANT00.78 BB11
1565b1m_J_DA157_DC158BBBBB01540.23 BB01
1575b1m_J_DC158_DC159NANNANT00.49 BA13
1585b1m_J_DC159_DT160NANNANT00.53 BB17
1595b1m_J_DT160_DG161B12BB04400.27 BB04
1605b1m_J_DG161_DC162miBBB10210.28 BB10
1615b1m_J_DC162_DA163NANNANT00.25 BB07
1625b1m_J_DA163_DG164BB2BB07110.32 BB07
1635b1m_J_DG164_DA165BBwBB02170.53 BB02
1645b1m_J_DA165_DT166BBBBB00450.31 BB00
1655b1m_J_DT166_DT167BBwBB03340.34 BB03
1665b1m_J_DT167_DC168NANNANT00.54 BB00
1675b1m_J_DC168_DT169NANNANT00.35 BB10
1685b1m_J_DT169_DA170BBBBB0060.36 BB00
1695b1m_J_DA170_DC171BBBBB00230.45 BB00
1705b1m_J_DC171_DC172BBBBB00970.15 BB00
1715b1m_J_DC172_DA173NANNANT00.42 BB08
1725b1m_J_DA173_DA174NANNANT00.40 BB10
1735b1m_J_DA174_DA175B12BB04650.28 BB04
1745b1m_J_DA175_DA176NANNANT00.35 BA08
1755b1m_J_DA176_DG177BBBBB00430.20 BB00
1765b1m_J_DG177_DT178BBBBB00760.12 BB00
1775b1m_J_DT178_DG179BBBBB00240.22 BB00
1785b1m_J_DG179_DT180BBBBB01790.19 BB01
1795b1m_J_DT180_DA181BBBBB01720.22 BB01
1805b1m_J_DA181_DT182B-ABA10630.28 BA10
1815b1m_J_DT182_DT183A-BAB03440.26 AB03
1825b1m_J_DT183_DT184BBBBB00890.18 BB00
1835b1m_J_DT184_DG185BB2BB07780.34 BB07
1845b1m_J_DG185_DG186BBBBB00570.25 BB00
1855b1m_J_DG186_DA187BB2BB07730.23 BB07
1865b1m_J_DA187_DA188BBBBB00350.23 BB00
1875b1m_J_DA188_DA189BBBBB01560.21 BB01
1885b1m_J_DA189_DC190BBBBB01760.18 BB01
1895b1m_J_DC190_DT191B-ABA05520.30 BA05
1905b1m_J_DT191_DG192NANNANT00.67 BB00
1915b1m_J_DG192_DC193BBBBB00100.35 BB00
1925b1m_J_DC193_DT194NANNANT00.33 BB07
1935b1m_J_DT194_DC195BBBBB00490.36 BB00
1945b1m_J_DC195_DC196BB2BB07340.30 BB07
1955b1m_J_DC196_DA197BBBBB00660.23 BB00
1965b1m_J_DA197_DT198BBBBB00430.29 BB00
1975b1m_J_DT198_DC199B-ABA08460.29 BA08
1985b1m_J_DC199_DA200AAAAA02500.47 AA02
1995b1m_J_DA200_DA201A-BAB03750.28 AB03
2005b1m_J_DA201_DA202miBBB10450.25 BB10
2015b1m_J_DA202_DA203BBBBB00830.24 BB00
2025b1m_J_DA203_DG204B12BB04320.45 BB04
2035b1m_J_DG204_DG205BB2BB07440.38 BB07
2045b1m_J_DG205_DC206BBBBB00790.24 BB00
2055b1m_J_DC206_DA207B12BB04860.19 BB04
2065b1m_J_DA207_DT208BBBBB00780.20 BB00
2075b1m_J_DT208_DG209BBBBB00730.20 BB00
2085b1m_J_DG209_DT210BBBBB01570.22 BB01
2095b1m_J_DT210_DT211A-BAB03430.30 AB03
2105b1m_J_DT211_DC212BBBBB00940.18 BB00
2115b1m_J_DC212_DA213B12BB04600.29 BB04
2125b1m_J_DA213_DG214BB2BB07820.26 BB07
2135b1m_J_DG214_DC215BBBBB00610.30 BB00
2145b1m_J_DC215_DT216B-ABA17850.18 BA17
2155b1m_J_DT216_DG217BBBBB00150.40 BB00
2165b1m_J_DG217_DA218BBBBB00570.16 BB00
2175b1m_J_DA218_DA219BBBBB00400.22 BB00
2185b1m_J_DA219_DT220BBBBB01660.22 BB01
2195b1m_J_DT220_DT221BBBBB01500.29 BB01
2205b1m_J_DT221_DC222BBBBB01740.24 BB01
2215b1m_J_DC222_DA223BBBBB00480.46 BB00
2225b1m_J_DA223_DG224BB2BB07310.27 BB07
2235b1m_J_DG224_DC225BBBBB00590.21 BB00
2245b1m_J_DC225_DT226BB2BB07560.19 BB07
2255b1m_J_DT226_DG227B12BB04500.36 BB04
2265b1m_J_DG227_DA228B12BB04590.29 BB04
2275b1m_J_DA228_DA229BBBBB00820.18 BB00
2285b1m_J_DA229_DC230BBBBB01780.18 BB01
2295b1m_J_DC230_DA231BBBBB00210.41 BB00
2305b1m_J_DA231_DT232BBBBB00240.18 BB00
2315b1m_J_DT232_DG233B12BB04660.39 BB04
2325b1m_J_DG233_DC234BB2BB07330.30 BB07
2335b1m_J_DC234_DC235BBBBB00330.27 BB00
2345b1m_J_DC235_DT236BB2BB07270.23 BB07
2355b1m_J_DT236_DT237BBBBB00500.26 BB00
2365b1m_J_DT237_DT238miBBB15720.19 BB15
2375b1m_J_DT238_DT239BBBBB00170.28 BB00
2385b1m_J_DT239_DG240BBBBB00430.25 BB00
2395b1m_J_DG240_DA241miBBB10820.36 BB10
2405b1m_J_DA241_DT242BBBBB00390.29 BB00
2415b1m_J_DT242_DG243NANNANT00.39 BB02
2425b1m_J_DG243_DG244BBBBB00590.39 BB00
2435b1m_J_DG244_DA245BB2BB07810.18 BB07
2445b1m_J_DA245_DG246B12BB04140.46 BB04
2455b1m_J_DG246_DC247BB2BB07470.18 BB07
2465b1m_J_DC247_DA248NANNANT00.45 BB11
2475b1m_J_DA248_DG249miBBB10400.40 BB10
2485b1m_J_DG249_DT250NANNANT00.44 BA16
2495b1m_J_DT250_DT251NANNANT00.46 AB04
2505b1m_J_DT251_DT252NANNANT00.39 BB03
2515b1m_J_DT252_DC253miBBB15490.40 BB15
2525b1m_J_DC253_DC254BBBBB00650.17 BB00
2535b1m_J_DC254_DA255BB2BB07150.41 BB07
2545b1m_J_DA255_DA256BBBBB00880.14 BB00
2555b1m_J_DA256_DA257BBBBB00550.25 BB00
2565b1m_J_DA257_DT258BBBBB00670.23 BB00
2575b1m_J_DT258_DA259BBBBB00750.26 BB00
2585b1m_J_DA259_DC260BBBBB00790.29 BB00
2595b1m_J_DC260_DA261B12BB04840.21 BB04
2605b1m_J_DA261_DC262BBBBB00850.12 BB00
2615b1m_J_DC262_DT263BBBBB00790.15 BB00
2625b1m_J_DT263_DT264BBBBB00850.24 BB00
2635b1m_J_DT264_DT265BBBBB00740.17 BB00
2645b1m_J_DT265_DT266miBBB13860.17 BB13
2655b1m_J_DT266_DG267B12BB04110.56 BB04
2665b1m_J_DG267_DG268BBBBB00770.19 BB00
2675b1m_J_DG268_DT269B12BB04120.16 BB04
2685b1m_J_DT269_DA270BBBBB00530.34 BB00
2695b1m_J_DA270_DG271BBBBB00350.27 BB00
2705b1m_J_DG271_DA272BBBBB00610.28 BB00
2715b1m_J_DA272_DA273BBBBB00820.15 BB00
2725b1m_J_DA273_DT274BBBBB00360.23 BB00
2735b1m_J_DT274_DC275B12BB04480.30 BB04
2745b1m_J_DC275_DT276miBBB15710.27 BB15
2755b1m_J_DT276_DG277NANNANT00.54 BB08
2765b1m_J_DG277_DC278BBBBB00240.46 BB00
2775b1m_J_DC278_DA279BB2BB07800.28 BB07
2785b1m_J_DA279_DG280NANNANT00.50 BB15
2795b1m_J_DG280_DG281B-ABA08750.24 BA08
2805b1m_J_DG281_DT282AAwAA01570.27 AA01
2815b1m_J_DT282_DG283NANNANT00.76 BB10
2825b1m_J_DG283_DG284NANNANT00.46 BB08
2835b1m_J_DG284_DA285BBwBB17250.39 BB17
2845b1m_J_DA285_DT286BBBBB00490.34 BB00
2855b1m_J_DT286_DA287BBBBB00870.24 BB00
2865b1m_J_DA287_DT288miBBB15690.23 BB15
2875b1m_J_DT288_DT289BBBBB00660.20 BB00
2885b1m_J_DT289_DG290BBBBB00700.32 BB00
2895b1m_J_DG290_DA291miBBB12900.26 BB12
2905b1m_J_DA291_DT292NANNANT01.35 BB11

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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