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Conformers: ABBIImiBZICOPNSYNN
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The crystal structure of the nucleosome containing H3.2, at 1.98 A resolution

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0015b0z_I_DA1_DT2NANNANT00.65 BB03
0025b0z_I_DT2_DC3miBBB15740.29 BB15
0035b0z_I_DC3_DA4miBBB15350.37 BB15
0045b0z_I_DA4_DA5BBBBB00160.31 BB00
0055b0z_I_DA5_DT6BBwBB02870.17 BB02
0065b0z_I_DT6_DA7BBBBB00610.22 BB00
0075b0z_I_DA7_DT8miBBB15510.32 BB15
0085b0z_I_DT8_DC9BBwBB02240.37 BB02
0095b0z_I_DC9_DC10NANNANT00.52 BB10
0105b0z_I_DC10_DA11BB2BB08550.33 BB08
0115b0z_I_DA11_DC12NANNANT00.32 BB15
0125b0z_I_DC12_DC13miBBB15740.29 BB15
0135b0z_I_DC13_DT14BBBBB00820.22 BB00
0145b0z_I_DT14_DG15BB2BB07680.34 BB07
0155b0z_I_DG15_DC16B12BB04140.35 BB04
0165b0z_I_DC16_DA17BB2BB07770.32 BB07
0175b0z_I_DA17_DG18B12BB04130.35 BB04
0185b0z_I_DG18_DA19BBBBB00520.30 BB00
0195b0z_I_DA19_DT20miBBB15820.21 BB15
0205b0z_I_DT20_DT21BBBBB00850.14 BB00
0215b0z_I_DT21_DC22BBBBB00890.17 BB00
0225b0z_I_DC22_DT23NANNANT00.34 BB02
0235b0z_I_DT23_DA24BBBBB00550.28 BB00
0245b0z_I_DA24_DC25BBBBB00680.40 BB00
0255b0z_I_DC25_DC26BBBBB00940.18 BB00
0265b0z_I_DC26_DA27BB2BB07640.33 BB07
0275b0z_I_DA27_DA28BBBBB00460.28 BB00
0285b0z_I_DA28_DA29NANNANT00.35 BB08
0295b0z_I_DA29_DA30BBBBB01230.34 BB01
0305b0z_I_DA30_DG31BBBBB00870.14 BB00
0315b0z_I_DG31_DT32BBwBB02690.17 BB02
0325b0z_I_DT32_DG33BBBBB00580.18 BB00
0335b0z_I_DG33_DT34BBBBB00740.18 BB00
0345b0z_I_DT34_DA35B12BB04670.20 BB04
0355b0z_I_DA35_DT36BBwBB02110.27 BB02
0365b0z_I_DT36_DT37BBwBB02350.28 BB02
0375b0z_I_DT37_DT38miBBB15610.24 BB15
0385b0z_I_DT38_DG39BB2BB07390.48 BB07
0395b0z_I_DG39_DG40BBBBB00550.45 BB00
0405b0z_I_DG40_DA41NANNANT00.59 BB10
0415b0z_I_DA41_DA42NANNANT00.35 BA05
0425b0z_I_DA42_DA43NANNANT00.38 BB15
0435b0z_I_DA43_DC44NANNANT00.52 BA10
0445b0z_I_DC44_DT45NANNANT00.49 BB03
0455b0z_I_DT45_DG46NANNANT00.58 BB11
0465b0z_I_DG46_DC47NANNANT00.53 BB08
0475b0z_I_DC47_DT48NANNANT00.66 BB02
0485b0z_I_DT48_DC49NANNANT00.70 BB02
0495b0z_I_DC49_DC50NANNANT00.44 BA08
0505b0z_I_DC50_DA51BBBBB00860.21 BB00
0515b0z_I_DA51_DT52miBBB15510.23 BB15
0525b0z_I_DT52_DC53BBBBB0050.29 BB00
0535b0z_I_DC53_DA54miBBB15470.31 BB15
0545b0z_I_DA54_DA55B12BB04170.33 BB04
0555b0z_I_DA55_DA56NANNANT00.39 BB02
0565b0z_I_DA56_DA57miBBB10430.46 BB10
0575b0z_I_DA57_DG58miBBB12280.45 BB12
0585b0z_I_DG58_DG59BBBBB00220.40 BB00
0595b0z_I_DG59_DC60BBBBB00800.30 BB00
0605b0z_I_DC60_DA61B12BB04800.25 BB04
0615b0z_I_DA61_DT62BBBBB00770.17 BB00
0625b0z_I_DT62_DG63BBBBB00680.30 BB00
0635b0z_I_DG63_DT64BBBBB00430.23 BB00
0645b0z_I_DT64_DT65BBBBB00850.17 BB00
0655b0z_I_DT65_DC66BBBBB00850.21 BB00
0665b0z_I_DC66_DA67BB2BB07830.24 BB07
0675b0z_I_DA67_DG68BBBBB00680.27 BB00
0685b0z_I_DG68_DC69BB2BB07830.19 BB07
0695b0z_I_DC69_DT70BBBBB00660.23 BB00
0705b0z_I_DT70_DG71BBBBB00800.18 BB00
0715b0z_I_DG71_DA72BBBBB00870.29 BB00
0725b0z_I_DA72_DA73BBBBB00750.13 BB00
0735b0z_I_DA73_DT74miBBB15730.19 BB15
0745b0z_I_DT74_DT75B12BB04380.32 BB04
0755b0z_I_DT75_DC76BBBBB00700.21 BB00
0765b0z_I_DC76_DA77B12BB04560.25 BB04
0775b0z_I_DA77_DG78BBBBB00530.24 BB00
0785b0z_I_DG78_DC79BB2BB07710.18 BB07
0795b0z_I_DC79_DT80B12BB04550.33 BB04
0805b0z_I_DT80_DG81B12BB04820.20 BB04
0815b0z_I_DG81_DA82BBBBB00930.16 BB00
0825b0z_I_DA82_DA83BBBBB00940.11 BB00
0835b0z_I_DA83_DC84NANNANT00.51 BB08
0845b0z_I_DC84_DA85BBBBB00620.40 BB00
0855b0z_I_DA85_DT86miBBB15740.20 BB15
0865b0z_I_DT86_DG87BBBBB00890.21 BB00
0875b0z_I_DG87_DC88BB2BB07620.32 BB07
0885b0z_I_DC88_DC89BBBBB00810.19 BB00
0895b0z_I_DC89_DT90BB2BB07560.29 BB07
0905b0z_I_DT90_DT91BBBBB00780.18 BB00
0915b0z_I_DT91_DT92BBwBB02730.20 BB02
0925b0z_I_DT92_DT93miBBB15420.42 BB15
0935b0z_I_DT93_DG94NANNANT00.56 BA08
0945b0z_I_DG94_DA95BBBBB00340.33 BB00
0955b0z_I_DA95_DT96miBBB15730.15 BB15
0965b0z_I_DT96_DG97miBBB15390.34 BB15
0975b0z_I_DG97_DG98BBBBB00260.29 BB00
0985b0z_I_DG98_DA99BB2BB07770.31 BB07
0995b0z_I_DA99_DG100BBBBB00130.34 BB00
1005b0z_I_DG100_DC101BB2BB08610.39 BB08
1015b0z_I_DC101_DA102NANNANT00.69 BB02
1025b0z_I_DA102_DG103B12BB04210.33 BB04
1035b0z_I_DG103_DT104BBwBB02740.20 BB02
1045b0z_I_DT104_DT105BBwBB02480.30 BB02
1055b0z_I_DT105_DT106BBBBB00320.23 BB00
1065b0z_I_DT106_DC107miBBB10460.29 BB10
1075b0z_I_DC107_DC108BB2BB08520.28 BB08
1085b0z_I_DC108_DA109BB2BB07520.41 BB07
1095b0z_I_DA109_DA110BBBBB00650.18 BB00
1105b0z_I_DA110_DA111B-ABA08680.27 BA08
1115b0z_I_DA111_DT112A-BAB03790.34 AB03
1125b0z_I_DT112_DA113BBBBB00790.20 BB00
1135b0z_I_DA113_DC114BBBBB00650.26 BB00
1145b0z_I_DC114_DA115B12BB04520.15 BB04
1155b0z_I_DA115_DC116miBBB15820.17 BB15
1165b0z_I_DC116_DT117miBBB15570.27 BB15
1175b0z_I_DT117_DT118BBwBB02380.34 BB02
1185b0z_I_DT118_DT119BBBBB00140.25 BB00
1195b0z_I_DT119_DT120BBBBB00640.19 BB00
1205b0z_I_DT120_DG121BB2BB07760.28 BB07
1215b0z_I_DG121_DG122BBBBB00700.23 BB00
1225b0z_I_DG122_DT123BBBBB00190.24 BB00
1235b0z_I_DT123_DA124BBBBB00400.31 BB00
1245b0z_I_DA124_DG125BBwBB02140.58 BB02
1255b0z_I_DG125_DA126BBBBB00240.29 BB00
1265b0z_I_DA126_DA127BBBBB00290.29 BB00
1275b0z_I_DA127_DT128BBwBB03360.41 BB03
1285b0z_I_DT128_DC129miBBB15410.31 BB15
1295b0z_I_DC129_DT130BBBBB00660.15 BB00
1305b0z_I_DT130_DG131NANNANT00.61 BB08
1315b0z_I_DG131_DC132BBBBB00430.32 BB00
1325b0z_I_DC132_DA133BB2BB07620.33 BB07
1335b0z_I_DA133_DG134NANNANT00.40 BB02
1345b0z_I_DG134_DG135miBBB10510.31 BB10
1355b0z_I_DG135_DT136B-ABA09650.20 BA09
1365b0z_I_DT136_DG137NANNANT00.55 BB16
1375b0z_I_DG137_DG138BBBBB00570.36 BB00
1385b0z_I_DG138_DA139NANNANT00.37 BB15
1395b0z_I_DA139_DT140miBBB15660.20 BB15
1405b0z_I_DT140_DA141BBwBB02440.32 BB02
1415b0z_I_DA141_DT142BBBBB00200.26 BB00
1425b0z_I_DT142_DT143BBBBB01700.19 BB01
1435b0z_I_DT143_DG144BBBBB00450.40 BB00
1445b0z_I_DG144_DA145BBBBB01320.26 BB01
1455b0z_I_DA145_DT146BBwBB02190.36 BB02
1465b0z_J_DA147_DT148BBwBB03290.49 BB03
1475b0z_J_DT148_DC149miBBB15540.45 BB15
1485b0z_J_DC149_DA150miBBB15230.41 BB15
1495b0z_J_DA150_DA151BBBBB00200.32 BB00
1505b0z_J_DA151_DT152BBwBB02850.15 BB02
1515b0z_J_DT152_DA153BBBBB00550.23 BB00
1525b0z_J_DA153_DT154miBBB15550.32 BB15
1535b0z_J_DT154_DC155BBwBB02230.41 BB02
1545b0z_J_DC155_DC156miBBB10110.43 BB10
1555b0z_J_DC156_DA157BB2BB08670.28 BB08
1565b0z_J_DA157_DC158NANNANT00.35 BB15
1575b0z_J_DC158_DC159miBBB15770.23 BB15
1585b0z_J_DC159_DT160BBBBB00840.24 BB00
1595b0z_J_DT160_DG161BB2BB07740.35 BB07
1605b0z_J_DG161_DC162B12BB0490.39 BB04
1615b0z_J_DC162_DA163BB2BB07850.25 BB07
1625b0z_J_DA163_DG164BBBBB00160.38 BB00
1635b0z_J_DG164_DA165NANNANT00.42 AB02
1645b0z_J_DA165_DT166miBBB15770.21 BB15
1655b0z_J_DT166_DT167BBBBB00800.20 BB00
1665b0z_J_DT167_DC168BBBBB00880.17 BB00
1675b0z_J_DC168_DT169NANNANT00.36 BB02
1685b0z_J_DT169_DA170BBBBB00160.28 BB00
1695b0z_J_DA170_DC171BBBBB00350.39 BB00
1705b0z_J_DC171_DC172BBBBB00940.24 BB00
1715b0z_J_DC172_DA173NANNANT00.47 BB08
1725b0z_J_DA173_DA174BBBBB00310.38 BB00
1735b0z_J_DA174_DA175NANNANT00.47 BB08
1745b0z_J_DA175_DA176BBBBB00150.35 BB00
1755b0z_J_DA176_DG177BBBBB00760.20 BB00
1765b0z_J_DG177_DT178BBwBB02550.25 BB02
1775b0z_J_DT178_DG179BBBBB00510.23 BB00
1785b0z_J_DG179_DT180BBBBB00760.20 BB00
1795b0z_J_DT180_DA181BBBBB00720.20 BB00
1805b0z_J_DA181_DT182NANNANT00.28 BB02
1815b0z_J_DT182_DT183BBwBB02210.33 BB02
1825b0z_J_DT183_DT184miBBB15560.29 BB15
1835b0z_J_DT184_DG185BB2BB07770.34 BB07
1845b0z_J_DG185_DG186BBBBB00670.24 BB00
1855b0z_J_DG186_DA187NANNANT00.60 BB10
1865b0z_J_DA187_DA188NANNANT00.50 BA08
1875b0z_J_DA188_DA189miBBB15140.36 BB15
1885b0z_J_DA189_DC190B-ABA09700.28 BA09
1895b0z_J_DC190_DT191NANNANT00.35 BB16
1905b0z_J_DT191_DG192B12BB04750.26 BB04
1915b0z_J_DG192_DC193B12BB04100.40 BB04
1925b0z_J_DC193_DT194BB2BB08710.44 BB08
1935b0z_J_DT194_DC195NANNANT00.70 BB02
1945b0z_J_DC195_DC196B-ABA17430.35 BA17
1955b0z_J_DC196_DA197BBBBB00810.25 BB00
1965b0z_J_DA197_DT198miBBB15510.26 BB15
1975b0z_J_DT198_DC199NANNANT00.30 BB00
1985b0z_J_DC199_DA200miBBB15300.31 BB15
1995b0z_J_DA200_DA201B12BB04130.23 BB04
2005b0z_J_DA201_DA202miBBB15730.31 BB15
2015b0z_J_DA202_DA203B12BB04140.24 BB04
2025b0z_J_DA203_DG204BBBBB00700.18 BB00
2035b0z_J_DG204_DG205BB2BB07500.30 BB07
2045b0z_J_DG205_DC206BBBBB00780.23 BB00
2055b0z_J_DC206_DA207B12BB04850.19 BB04
2065b0z_J_DA207_DT208BBBBB00880.14 BB00
2075b0z_J_DT208_DG209BBBBB00670.21 BB00
2085b0z_J_DG209_DT210BBBBB00380.22 BB00
2095b0z_J_DT210_DT211BBBBB00840.22 BB00
2105b0z_J_DT211_DC212BBBBB00850.24 BB00
2115b0z_J_DC212_DA213BB2BB07710.19 BB07
2125b0z_J_DA213_DG214BB2BB07830.24 BB07
2135b0z_J_DG214_DC215BBBBB00540.31 BB00
2145b0z_J_DC215_DT216BB2BB07240.24 BB07
2155b0z_J_DT216_DG217BBBBB00410.36 BB00
2165b0z_J_DG217_DA218BBBBB00890.14 BB00
2175b0z_J_DA218_DA219BBBBB00750.17 BB00
2185b0z_J_DA219_DT220miBBB15670.20 BB15
2195b0z_J_DT220_DT221B12BB04350.32 BB04
2205b0z_J_DT221_DC222BBBBB01750.20 BB01
2215b0z_J_DC222_DA223B12BB04560.26 BB04
2225b0z_J_DA223_DG224BBBBB00160.34 BB00
2235b0z_J_DG224_DC225BB2BB07100.48 BB07
2245b0z_J_DC225_DT226BB2BB07850.23 BB07
2255b0z_J_DT226_DG227B12BB04730.34 BB04
2265b0z_J_DG227_DA228BBBBB00630.44 BB00
2275b0z_J_DA228_DA229BBBBB00950.15 BB00
2285b0z_J_DA229_DC230BBwBB02300.27 BB02
2295b0z_J_DC230_DA231BBBBB00740.33 BB00
2305b0z_J_DA231_DT232miBBB15710.19 BB15
2315b0z_J_DT232_DG233BBBBB00860.26 BB00
2325b0z_J_DG233_DC234BB2BB07530.21 BB07
2335b0z_J_DC234_DC235BBBBB00880.20 BB00
2345b0z_J_DC235_DT236BB2BB07610.20 BB07
2355b0z_J_DT236_DT237BBBBB00710.23 BB00
2365b0z_J_DT237_DT238BBwBB02640.26 BB02
2375b0z_J_DT238_DT239miBBB15420.42 BB15
2385b0z_J_DT239_DG240NANNANT00.51 BB07
2395b0z_J_DG240_DA241NANNANT00.40 BB02
2405b0z_J_DA241_DT242miBBB15700.22 BB15
2415b0z_J_DT242_DG243miBBB15480.27 BB15
2425b0z_J_DG243_DG244BBBBB00390.25 BB00
2435b0z_J_DG244_DA245BB2BB07760.18 BB07
2445b0z_J_DA245_DG246NANNANT00.54 BB07
2455b0z_J_DG246_DC247NANNANT00.44 BB08
2465b0z_J_DC247_DA248NANNANT00.65 BB02
2475b0z_J_DA248_DG249NANNANT00.41 BB00
2485b0z_J_DG249_DT250BBwBB02540.30 BB02
2495b0z_J_DT250_DT251BBwBB02420.35 BB02
2505b0z_J_DT251_DT252BBBBB00240.20 BB00
2515b0z_J_DT252_DC253miBBB10480.28 BB10
2525b0z_J_DC253_DC254BB2BB08600.26 BB08
2535b0z_J_DC254_DA255BB2BB07620.24 BB07
2545b0z_J_DA255_DA256BBBBB00830.13 BB00
2555b0z_J_DA256_DA257B-ABA08610.37 BA08
2565b0z_J_DA257_DT258A-BAB03880.25 AB03
2575b0z_J_DT258_DA259BBBBB00830.26 BB00
2585b0z_J_DA259_DC260BBBBB00680.33 BB00
2595b0z_J_DC260_DA261BB2BB07500.29 BB07
2605b0z_J_DA261_DC262miBBB15830.14 BB15
2615b0z_J_DC262_DT263miBBB15640.20 BB15
2625b0z_J_DT263_DT264BBwBB02300.30 BB02
2635b0z_J_DT264_DT265BBBBB01290.35 BB01
2645b0z_J_DT265_DT266BBBBB00650.20 BB00
2655b0z_J_DT266_DG267BB2BB07750.34 BB07
2665b0z_J_DG267_DG268BBBBB00720.27 BB00
2675b0z_J_DG268_DT269BBBBB00270.28 BB00
2685b0z_J_DT269_DA270BBBBB00540.36 BB00
2695b0z_J_DA270_DG271BBwBB02150.47 BB02
2705b0z_J_DG271_DA272BBBBB00640.23 BB00
2715b0z_J_DA272_DA273BBBBB00360.24 BB00
2725b0z_J_DA273_DT274BBwBB03380.42 BB03
2735b0z_J_DT274_DC275BBwBB02100.38 BB02
2745b0z_J_DC275_DT276BBBBB00470.22 BB00
2755b0z_J_DT276_DG277NANNANT00.62 BB08
2765b0z_J_DG277_DC278BBBBB00390.34 BB00
2775b0z_J_DC278_DA279BB2BB07660.28 BB07
2785b0z_J_DA279_DG280NANNANT00.41 BB02
2795b0z_J_DG280_DG281miBBB10480.31 BB10
2805b0z_J_DG281_DT282B-ABA09430.26 BA09
2815b0z_J_DT282_DG283A-BAB05420.35 AB05
2825b0z_J_DG283_DG284BBBBB00650.30 BB00
2835b0z_J_DG284_DA285NANNANT00.45 BB10
2845b0z_J_DA285_DT286miBBB15660.24 BB15
2855b0z_J_DT286_DA287BBwBB02390.34 BB02
2865b0z_J_DA287_DT288BBBBB00170.30 BB00
2875b0z_J_DT288_DT289BBBBB00680.18 BB00
2885b0z_J_DT289_DG290BBBBB00800.25 BB00
2895b0z_J_DG290_DA291B-ABA0580.64 BA05
2905b0z_J_DA291_DT292NANNANT00.91 BB08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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