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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of the nucleosome containing histone H3 with the crotonylated lysine 122

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0015b0y_I_DA1_DT2NANNANT00.79 BB02
0025b0y_I_DT2_DC3BBwBB02320.26 BB02
0035b0y_I_DC3_DA4NANNANT00.37 BB04
0045b0y_I_DA4_DA5BBBBB00340.14 BB00
0055b0y_I_DA5_DT6BBBBB01530.20 BB01
0065b0y_I_DT6_DA7BBBBB0080.41 BB00
0075b0y_I_DA7_DT8BBBBB00880.16 BB00
0085b0y_I_DT8_DC9BBBBB00380.25 BB00
0095b0y_I_DC9_DC10NANNANT00.29 BA05
0105b0y_I_DC10_DA11NANNANT00.55 AA01
0115b0y_I_DA11_DC12A-BAB05670.16 AB05
0125b0y_I_DC12_DC13NANNANT00.47 BB15
0135b0y_I_DC13_DT14BBBBB00570.25 BB00
0145b0y_I_DT14_DG15BB2BB07500.34 BB07
0155b0y_I_DG15_DC16NANNANT00.28 BB07
0165b0y_I_DC16_DA17BB2BB07610.31 BB07
0175b0y_I_DA17_DG18B12BB04520.26 BB04
0185b0y_I_DG18_DA19BBBBB00370.33 BB00
0195b0y_I_DA19_DT20BBBBB00720.14 BB00
0205b0y_I_DT20_DT21BBBBB01800.17 BB01
0215b0y_I_DT21_DC22BBBBB00840.18 BB00
0225b0y_I_DC22_DT23BBBBB00400.18 BB00
0235b0y_I_DT23_DA24B12BB04710.25 BB04
0245b0y_I_DA24_DC25B12BB04440.31 BB04
0255b0y_I_DC25_DC26BBBBB00810.28 BB00
0265b0y_I_DC26_DA27BB2BB07710.34 BB07
0275b0y_I_DA27_DA28BBBBB00490.28 BB00
0285b0y_I_DA28_DA29NANNANT00.42 BB08
0295b0y_I_DA29_DA30BBBBB00400.28 BB00
0305b0y_I_DA30_DG31BBBBB00890.21 BB00
0315b0y_I_DG31_DT32BBBBB00230.20 BB00
0325b0y_I_DT32_DG33BBBBB00820.13 BB00
0335b0y_I_DG33_DT34BBBBB00800.13 BB00
0345b0y_I_DT34_DA35B12BB04870.14 BB04
0355b0y_I_DA35_DT36BBBBB01670.15 BB01
0365b0y_I_DT36_DT37BBBBB01600.28 BB01
0375b0y_I_DT37_DT38NANNANT00.34 BB15
0385b0y_I_DT38_DG39miBBB10500.42 BB10
0395b0y_I_DG39_DG40BB2BB07230.34 BB07
0405b0y_I_DG40_DA41BBwBB17450.27 BB17
0415b0y_I_DA41_DA42B-ABA01110.36 BA01
0425b0y_I_DA42_DA43NANNANT00.55 AA06
0435b0y_I_DA43_DC44NANNANT00.54 AA06
0445b0y_I_DC44_DT45NANNANT00.62 AA10
0455b0y_I_DT45_DG46NANNANT00.89 AA06
0465b0y_I_DG46_DC47NANNANT00.68 AB02
0475b0y_I_DC47_DT48NANNANT00.66 BB11
0485b0y_I_DT48_DC49miBBB10320.30 BB10
0495b0y_I_DC49_DC50BBBBB00740.26 BB00
0505b0y_I_DC50_DA51BBBBB00520.13 BB00
0515b0y_I_DA51_DT52NANNANT00.67 BB02
0525b0y_I_DT52_DC53B-ABA10500.56 BA10
0535b0y_I_DC53_DA54NANNANT00.51 BB10
0545b0y_I_DA54_DA55A-BAB03760.41 AB03
0555b0y_I_DA55_DA56BBBBB00820.21 BB00
0565b0y_I_DA56_DA57B12BB04700.30 BB04
0575b0y_I_DA57_DG58miBBB10530.35 BB10
0585b0y_I_DG58_DG59BB2BB07700.12 BB07
0595b0y_I_DG59_DC60BBBBB00750.28 BB00
0605b0y_I_DC60_DA61B12BB04760.23 BB04
0615b0y_I_DA61_DT62BBBBB01780.20 BB01
0625b0y_I_DT62_DG63BBBBB00570.32 BB00
0635b0y_I_DG63_DT64BBBBB00760.30 BB00
0645b0y_I_DT64_DT65BBBBB00870.13 BB00
0655b0y_I_DT65_DC66BBBBB00820.19 BB00
0665b0y_I_DC66_DA67BB2BB07820.25 BB07
0675b0y_I_DA67_DG68BBBBB00610.27 BB00
0685b0y_I_DG68_DC69BB2BB07700.26 BB07
0695b0y_I_DC69_DT70BBBBB00810.22 BB00
0705b0y_I_DT70_DG71BBBBB00660.28 BB00
0715b0y_I_DG71_DA72BB2BB07230.25 BB07
0725b0y_I_DA72_DA73BBBBB00420.12 BB00
0735b0y_I_DA73_DT74BBBBB00820.21 BB00
0745b0y_I_DT74_DT75BBBBB00810.18 BB00
0755b0y_I_DT75_DC76BBBBB00670.21 BB00
0765b0y_I_DC76_DA77BB2BB07880.28 BB07
0775b0y_I_DA77_DG78BBBBB00680.22 BB00
0785b0y_I_DG78_DC79BB2BB07780.28 BB07
0795b0y_I_DC79_DT80BBBBB00550.29 BB00
0805b0y_I_DT80_DG81B12BB04820.22 BB04
0815b0y_I_DG81_DA82BBBBB00930.16 BB00
0825b0y_I_DA82_DA83BBBBB00890.13 BB00
0835b0y_I_DA83_DC84BBBBB00230.25 BB00
0845b0y_I_DC84_DA85B12BB04680.18 BB04
0855b0y_I_DA85_DT86BBBBB00730.19 BB00
0865b0y_I_DT86_DG87BBBBB00620.27 BB00
0875b0y_I_DG87_DC88BB2BB07750.30 BB07
0885b0y_I_DC88_DC89BBBBB00590.27 BB00
0895b0y_I_DC89_DT90BB2BB07700.28 BB07
0905b0y_I_DT90_DT91BBBBB01870.18 BB01
0915b0y_I_DT91_DT92BBBBB00680.21 BB00
0925b0y_I_DT92_DT93BBBBB00720.20 BB00
0935b0y_I_DT93_DG94NANNANT00.38 BB05
0945b0y_I_DG94_DA95NANNANT00.44 BB00
0955b0y_I_DA95_DT96BBBBB00530.26 BB00
0965b0y_I_DT96_DG97miBBB10790.41 BB10
0975b0y_I_DG97_DG98BBBBB00660.16 BB00
0985b0y_I_DG98_DA99BB2BB07660.18 BB07
0995b0y_I_DA99_DG100BBBBB00700.28 BB00
1005b0y_I_DG100_DC101BB2BB08670.33 BB08
1015b0y_I_DC101_DA102BBBBB00450.52 BB00
1025b0y_I_DA102_DG103BBBBB00750.29 BB00
1035b0y_I_DG103_DT104BBwBB02440.32 BB02
1045b0y_I_DT104_DT105miBBB15530.21 BB15
1055b0y_I_DT105_DT106BBBBB00580.27 BB00
1065b0y_I_DT106_DC107BBBBB00810.29 BB00
1075b0y_I_DC107_DC108BB2BB07410.21 BB07
1085b0y_I_DC108_DA109BB2BB07560.36 BB07
1095b0y_I_DA109_DA110BBBBB00700.20 BB00
1105b0y_I_DA110_DA111B-ABA08910.17 BA08
1115b0y_I_DA111_DT112A-BAB01710.27 AB01
1125b0y_I_DT112_DA113miBBB15710.29 BB15
1135b0y_I_DA113_DC114BBBBB00190.20 BB00
1145b0y_I_DC114_DA115B12BB04610.17 BB04
1155b0y_I_DA115_DC116B-ABA01400.24 BA01
1165b0y_I_DC116_DT117A-BAB01440.38 AB01
1175b0y_I_DT117_DT118BBBBB01500.25 BB01
1185b0y_I_DT118_DT119BBBBB00560.22 BB00
1195b0y_I_DT119_DT120B-ABA17660.21 BA17
1205b0y_I_DT120_DG121A-BAB03730.21 AB03
1215b0y_I_DG121_DG122B12BB04280.13 BB04
1225b0y_I_DG122_DT123BBBBB01670.17 BB01
1235b0y_I_DT123_DA124B12BB04430.42 BB04
1245b0y_I_DA124_DG125NANNANT00.43 BA13
1255b0y_I_DG125_DA126A-BAB01470.23 AB01
1265b0y_I_DA126_DA127BBBBB00780.14 BB00
1275b0y_I_DA127_DT128miBBB13670.33 BB13
1285b0y_I_DT128_DC129BBBBB00390.58 BB00
1295b0y_I_DC129_DT130BB2BB07750.26 BB07
1305b0y_I_DT130_DG131BBBBB00620.34 BB00
1315b0y_I_DG131_DC132BB2BB07360.35 BB07
1325b0y_I_DC132_DA133miBBB10320.38 BB10
1335b0y_I_DA133_DG134B-ABA10510.45 BA10
1345b0y_I_DG134_DG135NANNANT00.66 AA10
1355b0y_I_DG135_DT136A-BAB05610.22 AB05
1365b0y_I_DT136_DG137miBBB10370.29 BB10
1375b0y_I_DG137_DG138B-ABA17530.32 BA17
1385b0y_I_DG138_DA139BBBBB00370.39 BB00
1395b0y_I_DA139_DT140NANNANT00.31 BB15
1405b0y_I_DT140_DA141BBBBB00280.32 BB00
1415b0y_I_DA141_DT142BBBBB00830.21 BB00
1425b0y_I_DT142_DT143BBBBB00810.23 BB00
1435b0y_I_DT143_DG144B12BB04860.12 BB04
1445b0y_I_DG144_DA145BBBBB00930.14 BB00
1455b0y_I_DA145_DT146NANNANT00.40 BB05
1465b0y_J_DA147_DT148A-BAB04640.36 AB04
1475b0y_J_DT148_DC149BBBBB00360.34 BB00
1485b0y_J_DC149_DA150BBBBB00350.30 BB00
1495b0y_J_DA150_DA151BBBBB00710.23 BB00
1505b0y_J_DA151_DT152BBBBB00670.21 BB00
1515b0y_J_DT152_DA153BBBBB00530.18 BB00
1525b0y_J_DA153_DT154miBBB15560.28 BB15
1535b0y_J_DT154_DC155BBwBB03180.46 BB03
1545b0y_J_DC155_DC156NANNANT00.66 BB17
1555b0y_J_DC156_DA157NANNANT00.53 AB02
1565b0y_J_DA157_DC158BBwBB17450.32 BB17
1575b0y_J_DC158_DC159NANNANT00.48 BA10
1585b0y_J_DC159_DT160NANNANT00.42 BB16
1595b0y_J_DT160_DG161B12BB04620.45 BB04
1605b0y_J_DG161_DC162NANNANT00.51 BB08
1615b0y_J_DC162_DA163B12BB04480.55 BB04
1625b0y_J_DA163_DG164BBBBB00480.33 BB00
1635b0y_J_DG164_DA165miBBB10350.39 BB10
1645b0y_J_DA165_DT166BBwBB02530.34 BB02
1655b0y_J_DT166_DT167BBBBB00420.33 BB00
1665b0y_J_DT167_DC168miBBB10180.40 BB10
1675b0y_J_DC168_DT169BBwBB02530.23 BB02
1685b0y_J_DT169_DA170BBBBB00340.30 BB00
1695b0y_J_DA170_DC171BBBBB00460.28 BB00
1705b0y_J_DC171_DC172NANNANT00.34 BB15
1715b0y_J_DC172_DA173NANNANT00.57 BB08
1725b0y_J_DA173_DA174BB2BB07170.38 BB07
1735b0y_J_DA174_DA175B12BB04560.24 BB04
1745b0y_J_DA175_DA176BBBBB00570.29 BB00
1755b0y_J_DA176_DG177BBBBB00720.16 BB00
1765b0y_J_DG177_DT178BBBBB00570.23 BB00
1775b0y_J_DT178_DG179B12BB04750.27 BB04
1785b0y_J_DG179_DT180BBBBB01200.25 BB01
1795b0y_J_DT180_DA181BBBBB01590.26 BB01
1805b0y_J_DA181_DT182BBBBB01350.18 BB01
1815b0y_J_DT182_DT183BBBBB01170.39 BB01
1825b0y_J_DT183_DT184BBBBB00720.27 BB00
1835b0y_J_DT184_DG185BB2BB07540.41 BB07
1845b0y_J_DG185_DG186BBBBB00500.25 BB00
1855b0y_J_DG186_DA187BB2BB07490.26 BB07
1865b0y_J_DA187_DA188BBwBB17420.38 BB17
1875b0y_J_DA188_DA189BBBBB01580.26 BB01
1885b0y_J_DA189_DC190BBBBB01590.24 BB01
1895b0y_J_DC190_DT191BBBBB00650.21 BB00
1905b0y_J_DT191_DG192B12BB04690.27 BB04
1915b0y_J_DG192_DC193BBBBB00500.39 BB00
1925b0y_J_DC193_DT194NANNANT00.48 BB08
1935b0y_J_DT194_DC195miBBB15380.67 BB15
1945b0y_J_DC195_DC196BB2BB07510.27 BB07
1955b0y_J_DC196_DA197BBBBB00740.26 BB00
1965b0y_J_DA197_DT198B-ABA05440.24 BA05
1975b0y_J_DT198_DC199B-ABA05490.37 BA05
1985b0y_J_DC199_DA200A-BAB01130.37 AB01
1995b0y_J_DA200_DA201BBBBB00420.24 BB00
2005b0y_J_DA201_DA202miBBB10330.40 BB10
2015b0y_J_DA202_DA203BBBBB00760.14 BB00
2025b0y_J_DA203_DG204B12BB04620.25 BB04
2035b0y_J_DG204_DG205BB2BB07850.21 BB07
2045b0y_J_DG205_DC206BBBBB00730.21 BB00
2055b0y_J_DC206_DA207B12BB04730.22 BB04
2065b0y_J_DA207_DT208BBBBB00310.22 BB00
2075b0y_J_DT208_DG209BBBBB00760.17 BB00
2085b0y_J_DG209_DT210BBBBB00750.24 BB00
2095b0y_J_DT210_DT211BBBBB00860.17 BB00
2105b0y_J_DT211_DC212BBBBB00530.25 BB00
2115b0y_J_DC212_DA213BBBBB00760.27 BB00
2125b0y_J_DA213_DG214BB2BB07550.33 BB07
2135b0y_J_DG214_DC215BBBBB00700.26 BB00
2145b0y_J_DC215_DT216BB2BB07490.22 BB07
2155b0y_J_DT216_DG217BBBBB00580.34 BB00
2165b0y_J_DG217_DA218BBBBB00710.15 BB00
2175b0y_J_DA218_DA219BBBBB00600.21 BB00
2185b0y_J_DA219_DT220BBBBB01580.22 BB01
2195b0y_J_DT220_DT221BBBBB00410.23 BB00
2205b0y_J_DT221_DC222BBBBB00870.21 BB00
2215b0y_J_DC222_DA223B12BB04450.27 BB04
2225b0y_J_DA223_DG224BB2BB07650.15 BB07
2235b0y_J_DG224_DC225BBBBB00600.24 BB00
2245b0y_J_DC225_DT226BB2BB07730.22 BB07
2255b0y_J_DT226_DG227B12BB04730.37 BB04
2265b0y_J_DG227_DA228B12BB04570.29 BB04
2275b0y_J_DA228_DA229BBBBB00880.13 BB00
2285b0y_J_DA229_DC230BBBBB00740.21 BB00
2295b0y_J_DC230_DA231B12BB04530.18 BB04
2305b0y_J_DA231_DT232BBBBB00810.15 BB00
2315b0y_J_DT232_DG233B12BB04740.24 BB04
2325b0y_J_DG233_DC234BBBBB00730.19 BB00
2335b0y_J_DC234_DC235BB2BB07770.29 BB07
2345b0y_J_DC235_DT236BB2BB07680.20 BB07
2355b0y_J_DT236_DT237B12BB04130.29 BB04
2365b0y_J_DT237_DT238BBBBB01820.11 BB01
2375b0y_J_DT238_DT239BBBBB00500.22 BB00
2385b0y_J_DT239_DG240A-BAB03210.51 AB03
2395b0y_J_DG240_DA241BBBBB01380.24 BB01
2405b0y_J_DA241_DT242miBBB10720.21 BB10
2415b0y_J_DT242_DG243miBBB10490.49 BB10
2425b0y_J_DG243_DG244BBwBB17530.28 BB17
2435b0y_J_DG244_DA245NANNANT00.38 BB07
2445b0y_J_DA245_DG246BB2BB07530.19 BB07
2455b0y_J_DG246_DC247BBBBB00760.18 BB00
2465b0y_J_DC247_DA248BB2BB08610.44 BB08
2475b0y_J_DA248_DG249NANNANT00.56 BB15
2485b0y_J_DG249_DT250NANNANT00.49 BB10
2495b0y_J_DT250_DT251AAwAA01260.39 AA01
2505b0y_J_DT251_DT252A-BAB05370.38 AB05
2515b0y_J_DT252_DC253NANNANT00.62 BA08
2525b0y_J_DC253_DC254NANNANT00.61 BB08
2535b0y_J_DC254_DA255BB2BB07540.31 BB07
2545b0y_J_DA255_DA256BBBBB00710.28 BB00
2555b0y_J_DA256_DA257BBBBB00810.18 BB00
2565b0y_J_DA257_DT258B12BB04390.26 BB04
2575b0y_J_DT258_DA259BBBBB00580.32 BB00
2585b0y_J_DA259_DC260BBBBB00490.25 BB00
2595b0y_J_DC260_DA261B12BB04320.17 BB04
2605b0y_J_DA261_DC262BBwBB02730.16 BB02
2615b0y_J_DC262_DT263B-ABA05620.29 BA05
2625b0y_J_DT263_DT264BBBBB01660.22 BB01
2635b0y_J_DT264_DT265B-ABA08610.41 BA08
2645b0y_J_DT265_DT266A-BAB03390.37 AB03
2655b0y_J_DT266_DG267BB2BB07770.35 BB07
2665b0y_J_DG267_DG268BBBBB00710.20 BB00
2675b0y_J_DG268_DT269BBBBB00860.28 BB00
2685b0y_J_DT269_DA270BBBBB00750.35 BB00
2695b0y_J_DA270_DG271B-ABA05210.29 BA05
2705b0y_J_DG271_DA272NANNANT00.45 BB14
2715b0y_J_DA272_DA273BBBBB00850.24 BB00
2725b0y_J_DA273_DT274BBBBB01740.20 BB01
2735b0y_J_DT274_DC275BBBBB00630.21 BB00
2745b0y_J_DC275_DT276BBBBB00680.22 BB00
2755b0y_J_DT276_DG277NANNANT00.52 BB08
2765b0y_J_DG277_DC278BBBBB00100.47 BB00
2775b0y_J_DC278_DA279BB2BB07860.22 BB07
2785b0y_J_DA279_DG280NANNANT00.41 BB15
2795b0y_J_DG280_DG281B-ABA13250.22 BA13
2805b0y_J_DG281_DT282NANNANT00.47 BB17
2815b0y_J_DT282_DG283B-ABA10280.45 BA10
2825b0y_J_DG283_DG284NANNANT00.75 AA06
2835b0y_J_DG284_DA285NANNANT00.38 BB10
2845b0y_J_DA285_DT286BBBBB00690.27 BB00
2855b0y_J_DT286_DA287NANNANT00.53 BB02
2865b0y_J_DA287_DT288NANNANT00.43 BB01
2875b0y_J_DT288_DT289B12BB04260.28 BB04
2885b0y_J_DT289_DG290BBBBB00670.25 BB00
2895b0y_J_DG290_DA291B12BB04550.21 BB04
2905b0y_J_DA291_DT292NANNANT00.27 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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