DNATCO v4.1: results

Crystal structure of Staphylococcus aureus Cas9 in complex with sgRNA and target DNA (TTGGGT PAM)

Results of the assignment of 108 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	5axw_B_G1_G2	AAA	AA00	85	0.12	AA00
002	5axw_B_G2_A3	AAA	AA00	27	0.34	AA00
003	5axw_B_A3_A4	AAA	AA00	84	0.12	AA00
004	5axw_B_A4_A5	AAA	AA00	88	0.16	AA00
005	5axw_B_A5_U6	AAA	AA00	54	0.30	AA00
006	5axw_B_U6_U7	AAA	AA00	91	0.10	AA00
007	5axw_B_U7_A8	AAA	AA00	94	0.10	AA00
008	5axw_B_A8_G9	AAA	AA00	87	0.12	AA00
009	5axw_B_G9_G10	AAA	AA00	68	0.24	AA00
010	5axw_B_G10_U11	AAA	AA00	83	0.14	AA00
011	5axw_B_U11_G12	AAA	AA00	90	0.16	AA00
012	5axw_B_G12_C13	AAA	AA00	88	0.09	AA00
013	5axw_B_C13_G14	AAA	AA00	83	0.19	AA00
014	5axw_B_G14_C15	AAA	AA00	82	0.22	AA00
015	5axw_B_C15_U16	AAA	AA00	82	0.20	AA00
016	5axw_B_U16_U17	AAw	AA10	95	0.20	AA10
017	5axw_B_U17_G18	AAA	AA08	74	0.27	AA08
018	5axw_B_G18_G19	AAA	AA08	93	0.18	AA08
019	5axw_B_G19_C20	AAw	AA01	81	0.19	AA01
020	5axw_B_C20_G21	AAA	AA00	32	0.47	AA00
021	5axw_B_G21_U22	AAA	AA08	79	0.18	AA08
022	5axw_B_U22_U23	AAA	AA00	76	0.23	AA00
023	5axw_B_U23_U24	AAA	AA00	73	0.16	AA00
024	5axw_B_U24_U25	AAA	AA08	87	0.16	AA08
025	5axw_B_U25_A26	AAA	AA00	89	0.14	AA00
026	5axw_B_A26_G27	AAA	AA00	98	0.08	AA00
027	5axw_B_G27_U28	AAA	AA00	98	0.08	AA00
028	5axw_B_U28_A29	AAA	AA08	84	0.17	AA08
029	5axw_B_A29_C30	AAA	AA08	80	0.20	AA08
030	5axw_B_C30_U31	AAA	AA00	60	0.25	AA00
031	5axw_B_U31_C32	AAA	AA00	88	0.16	AA00
032	5axw_B_C32_U33	AAA	AA00	83	0.15	AA00
033	5axw_B_U33_G34	AAA	AA00	84	0.14	AA00
034	5axw_B_G34_G35	AAA	AA00	85	0.18	AA00
035	5axw_B_G35_A36	OPN	OP03	80	0.15	OP03
036	5axw_B_A36_A37	AAA	AA08	92	0.25	AA08
037	5axw_B_A37_A38	AAA	AA00	71	0.25	AA00
038	5axw_B_A38_C39	AAA	AA08	20	0.69	AA08
039	5axw_B_C39_A40	AAA	AA00	90	0.12	AA00
040	5axw_B_A40_G41	AAA	AA00	85	0.10	AA00
041	5axw_B_G41_A42	AAA	AA00	89	0.14	AA00
042	5axw_B_A42_A43	AAA	AA00	80	0.19	AA00
043	5axw_B_A43_U44	A-B	AB05	81	0.21	AB05
044	5axw_B_U44_C45	NAN	NANT	0	0.69	OP26
045	5axw_B_C45_U46	AAA	AA08	78	0.25	AA08
046	5axw_B_U46_A47	AAA	AA00	82	0.15	AA00
047	5axw_B_A47_C48	AAA	AA08	85	0.24	AA08
048	5axw_B_C48_U49	AAA	AA00	94	0.13	AA00
049	5axw_B_U49_A50	AAA	AA00	94	0.14	AA00
050	5axw_B_A50_A51	AAA	AA00	94	0.15	AA00
051	5axw_B_A51_A52	AAA	AA00	95	0.10	AA00
052	5axw_B_A52_A53	AAA	AA00	83	0.19	AA00
053	5axw_B_A53_C54	AAA	AA00	91	0.18	AA00
054	5axw_B_C54_A55	NAN	NANT	0	2.09	OP31
055	5axw_B_A55_A56	NAN	NANT	0	0.83	OPS1
056	5axw_B_A56_G57	NAN	NANT	0	0.90	AA08
057	5axw_B_G57_G58	AAA	AA00	71	0.26	AA00
058	5axw_B_G58_C59	AAw	AA01	64	0.21	AA01
059	5axw_B_C59_A60	AAA	AA08	15	0.60	AA08
060	5axw_B_A60_A61	NAN	NANT	0	0.53	AA11
061	5axw_B_A61_A62	NAN	NANT	0	1.28	OP22
062	5axw_B_A62_A63	NAN	NANT	0	2.00	BB17
063	5axw_B_A63_U64	NAN	NANT	0	0.41	OP13
064	5axw_B_U64_G65	NAN	NANT	0	1.48	OP05
065	5axw_B_G65_C66	AAA	AA00	57	0.24	AA00
066	5axw_B_C66_C67	AAA	AA00	69	0.24	AA00
067	5axw_B_C67_G68	AAA	AA00	94	0.15	AA00
068	5axw_B_G68_U69	NAN	NANT	0	0.84	IC02
069	5axw_B_U69_G70	OPN	OP11	88	0.28	OP11
070	5axw_B_G70_U71	AAA	AA00	90	0.14	AA00
071	5axw_B_U71_U72	AAA	AA08	57	0.20	AA08
072	5axw_C_DC1_DT2	A-B	AB05	71	0.20	AB05
073	5axw_C_DT2_DA3	BBB	BB00	88	0.25	BB00
074	5axw_C_DA3_DC4	B-A	BA09	55	0.20	BA09
075	5axw_C_DC4_DC5	AAA	AA08	76	0.25	AA08
076	5axw_C_DC5_DC6	NAN	NANT	0	0.51	AB04
077	5axw_C_DC6_DA7	A-B	AB03	83	0.23	AB03
078	5axw_C_DA7_DA8	B12	BB04	81	0.15	BB04
079	5axw_C_DA8_DG9	NAN	NANT	0	0.51	OP17
080	5axw_C_DG9_DC10	BBB	BB00	9	0.57	BB00
081	5axw_C_DC10_DC11	B-A	BA13	47	0.21	BA13
082	5axw_C_DC11_DA.A12	AAA	AA00	71	0.26	AA00
083	5axw_C_DC11_DA.B12	NAN	NANT	0	0.59	AA06
084	5axw_C_DA.A12_DA.A13	AAA	AA00	38	0.36	AA00
085	5axw_C_DA.B12_DA.B13	NAN	NANT	0	1.55	OP24
086	5axw_C_DA.A13_DG14	NAN	NANT	0	0.33	AA06
087	5axw_C_DA.B13_DG14	NAN	NANT	0	0.36	AA01
088	5axw_C_DG14_DC15	AAA	AA08	21	0.28	AA08
089	5axw_C_DC15_DG16	AAA	AA00	78	0.25	AA00
090	5axw_C_DG16_DC17	AAA	AA08	86	0.19	AA08
091	5axw_C_DC17_DA18	AAA	AA00	95	0.11	AA00
092	5axw_C_DA18_DC19	AAA	AA00	91	0.16	AA00
093	5axw_C_DC19_DC20	AAA	AA00	92	0.16	AA00
094	5axw_C_DC20_DT21	AAA	AA00	92	0.17	AA00
095	5axw_C_DT21_DA22	AAA	AA00	85	0.18	AA00
096	5axw_C_DA22_DA23	AAA	AA00	86	0.17	AA00
097	5axw_C_DA23_DT24	AAA	AA00	83	0.21	AA00
098	5axw_C_DT24_DT25	AAA	AA00	60	0.29	AA00
099	5axw_C_DT25_DT26	AAA	AA00	52	0.27	AA00
100	5axw_C_DT26_DC27	A-B	AB01	21	0.34	AB01
101	5axw_C_DC27_DC28	BBB	BB00	41	0.41	BB00
102	5axw_D_DT1_DT2	BBB	BB00	67	0.24	BB00
103	5axw_D_DT2_DG3	BB2	BB08	46	0.29	BB08
104	5axw_D_DG3_DG4	BBB	BB00	21	0.49	BB00
105	5axw_D_DG4_DG5	BB2	BB07	38	0.24	BB07
106	5axw_D_DG5_DT6	BBB	BB00	46	0.32	BB00
107	5axw_D_DT6_DA7	BBB	BB00	72	0.26	BB00
108	5axw_D_DA7_DG8	BBB	BB01	79	0.21	BB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 108 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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