Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
human nucleosome core particle

Results of the assignment of 292 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0015av8_I_DA-73_DT-72A-BAB05330.21 AB05
0025av8_I_DT-72_DC-71BBBBB00820.23 BB00
0035av8_I_DC-71_DA-70B12BB04630.21 BB04
0045av8_I_DA-70_DA-69B12BB04750.14 BB04
0055av8_I_DA-69_DT-68BBBBB01580.21 BB01
0065av8_I_DT-68_DA-67BBBBB00130.41 BB00
0075av8_I_DA-67_DT-66BBBBB00840.17 BB00
0085av8_I_DT-66_DC-65BBBBB01320.20 BB01
0095av8_I_DC-65_DC-64A-BAB03850.23 AB03
0105av8_I_DC-64_DA-63B12BB04190.14 BB04
0115av8_I_DA-63_DC-62B-ABA01300.22 BA01
0125av8_I_DC-62_DC-61B-ABA05390.35 BA05
0135av8_I_DC-61_DT-60A-BAB01610.19 AB01
0145av8_I_DT-60_DG-59B12BB04690.15 BB04
0155av8_I_DG-59_DC-58BBBBB00900.12 BB00
0165av8_I_DC-58_DA-57BB2BB07730.30 BB07
0175av8_I_DA-57_DG-56BBBBB00380.32 BB00
0185av8_I_DG-56_DA-55B12BB04670.17 BB04
0195av8_I_DA-55_DT-54BBBBB01500.17 BB01
0205av8_I_DT-54_DA-53BBBBB00100.27 BB00
0215av8_I_DA-53_DC-52BBBBB00730.26 BB00
0225av8_I_DC-52_DT-51B-ABA08390.32 BA08
0235av8_I_DT-51_DA-50BBBBB01630.16 BB01
0245av8_I_DA-50_DC-49BBBBB01870.21 BB01
0255av8_I_DC-49_DC-48BBBBB00540.31 BB00
0265av8_I_DC-48_DA-47BB2BB07840.26 BB07
0275av8_I_DA-47_DA-46B-ABA08200.48 BA08
0285av8_I_DA-46_DA-45A-BAB03640.25 AB03
0295av8_I_DA-45_DA-44B-ABA05120.26 BA05
0305av8_I_DA-44_DG-43A-BAB03890.27 AB03
0315av8_I_DG-43_DT-42BBBBB00260.26 BB00
0325av8_I_DT-42_DG-41BBBBB00730.13 BB00
0335av8_I_DG-41_DT-40BBBBB00720.21 BB00
0345av8_I_DT-40_DA-39BBBBB00840.20 BB00
0355av8_I_DA-39_DT-38BBBBB00860.18 BB00
0365av8_I_DT-38_DT-37BBBBB00700.28 BB00
0375av8_I_DT-37_DT-36BBBBB00820.17 BB00
0385av8_I_DT-36_DG-35BB2BB07700.30 BB07
0395av8_I_DG-35_DG-34BBBBB00790.28 BB00
0405av8_I_DG-34_DA-33BB2BB07910.20 BB07
0415av8_I_DA-33_DA-32BBBBB00710.14 BB00
0425av8_I_DA-32_DA-31BBBBB00120.33 BB00
0435av8_I_DA-31_DC-30BBBBB01640.18 BB01
0445av8_I_DC-30_DT-29BBBBB00730.20 BB00
0455av8_I_DT-29_DG-28B12BB04920.15 BB04
0465av8_I_DG-28_DC-27BBBBB00710.21 BB00
0475av8_I_DC-27_DT-26BB2BB07570.24 BB07
0485av8_I_DT-26_DC-25BBBBB00740.30 BB00
0495av8_I_DC-25_DC-24BB2BB07210.24 BB07
0505av8_I_DC-24_DA-23BBBBB00480.27 BB00
0515av8_I_DA-23_DT-22BBBBB00690.20 BB00
0525av8_I_DT-22_DC-21NANNANT00.31 BB10
0535av8_I_DC-21_DA-20A-BAB01500.28 AB01
0545av8_I_DA-20_DA-19NANNANT00.35 BB17
0555av8_I_DA-19_DA-18NANNANT00.48 BB05
0565av8_I_DA-18_DA-17BBBBB00630.45 BB00
0575av8_I_DA-17_DG-16B12BB04750.23 BB04
0585av8_I_DG-16_DG-15BB2BB07300.33 BB07
0595av8_I_DG-15_DC-14BBBBB00710.21 BB00
0605av8_I_DC-14_DA-13B12BB04790.18 BB04
0615av8_I_DA-13_DT-12BBBBB01840.10 BB01
0625av8_I_DT-12_DG-11BBBBB00510.18 BB00
0635av8_I_DG-11_DT-10BBBBB00380.22 BB00
0645av8_I_DT-10_DT-9BBBBB00590.21 BB00
0655av8_I_DT-9_DC-8BBBBB00910.13 BB00
0665av8_I_DC-8_DA-7BBBBB00690.23 BB00
0675av8_I_DA-7_DG-6BB2BB07650.26 BB07
0685av8_I_DG-6_DC-5BBBBB00690.22 BB00
0695av8_I_DC-5_DT-4BB2BB07100.25 BB07
0705av8_I_DT-4_DG-3BBBBB00280.35 BB00
0715av8_I_DG-3_DG-2BBBBB00860.17 BB00
0725av8_I_DG-2_DA-1miBBB10640.36 BB10
0735av8_I_DA-1_DA0BBBBB01700.15 BB01
0745av8_I_DA0_DT1BBBBB00630.23 BB00
0755av8_I_DT1_DC2B-ABA05270.31 BA05
0765av8_I_DC2_DC3BBBBB00290.35 BB00
0775av8_I_DC3_DA4BB2BB07910.22 BB07
0785av8_I_DA4_DG5BBBBB00820.18 BB00
0795av8_I_DG5_DC6BB2BB07770.23 BB07
0805av8_I_DC6_DT7BBBBB00110.34 BB00
0815av8_I_DT7_DG8BBBBB00330.46 BB00
0825av8_I_DG8_DA9BBBBB00890.18 BB00
0835av8_I_DA9_DA10BBBBB00950.10 BB00
0845av8_I_DA10_DC11BBBBB00200.25 BB00
0855av8_I_DC11_DA12BBBBB00380.31 BB00
0865av8_I_DA12_DT13BBBBB00770.18 BB00
0875av8_I_DT13_DG14BBBBB00810.20 BB00
0885av8_I_DG14_DC15BB2BB07460.29 BB07
0895av8_I_DC15_DC16B12BB04540.46 BB04
0905av8_I_DC16_DT17BB2BB07570.24 BB07
0915av8_I_DT17_DT18BBBBB01840.16 BB01
0925av8_I_DT18_DT19BBBBB00490.19 BB00
0935av8_I_DT19_DT20BBBBB00150.27 BB00
0945av8_I_DT20_DG21BBBBB00360.21 BB00
0955av8_I_DG21_DA22B12BB04650.19 BB04
0965av8_I_DA22_DT23miBBB15430.28 BB15
0975av8_I_DT23_DG24B12BB04790.24 BB04
0985av8_I_DG24_DG25BBBBB00820.31 BB00
0995av8_I_DG25_DA26BB2BB07650.34 BB07
1005av8_I_DA26_DG27BBBBB00660.33 BB00
1015av8_I_DG27_DC28BB2BB07840.15 BB07
1025av8_I_DC28_DA29BBBBB00840.23 BB00
1035av8_I_DA29_DG30B12BB04840.15 BB04
1045av8_I_DG30_DT31BBBBB01360.27 BB01
1055av8_I_DT31_DT32BBBBB01310.19 BB01
1065av8_I_DT32_DT33BBBBB00630.23 BB00
1075av8_I_DT33_DC34BBBBB00810.24 BB00
1085av8_I_DC34_DC35B12BB04660.27 BB04
1095av8_I_DC35_DA36BB2BB07730.24 BB07
1105av8_I_DA36_DA37BBBBB00940.11 BB00
1115av8_I_DA37_DA38B-ABA08900.18 BA08
1125av8_I_DA38_DT39A-BAB01710.23 AB01
1135av8_I_DT39_DA40BBBBB00410.25 BB00
1145av8_I_DA40_DC41BBwBB02140.36 BB02
1155av8_I_DC41_DA42BBBBB00690.30 BB00
1165av8_I_DA42_DC43BBBBB00120.21 BB00
1175av8_I_DC43_DT44BBBBB01640.22 BB01
1185av8_I_DT44_DT45BBBBB00650.22 BB00
1195av8_I_DT45_DT46BBBBB00500.26 BB00
1205av8_I_DT46_DT47miBBB15510.31 BB15
1215av8_I_DT47_DG48B12BB04700.29 BB04
1225av8_I_DG48_DG49B12BB04690.24 BB04
1235av8_I_DG49_DT50B-ABA01780.22 BA01
1245av8_I_DT50_DA51NANNANT00.31 AB03
1255av8_I_DA51_DG52NANNANT00.28 BB05
1265av8_I_DG52_DT53BBBBB01350.48 BB01
1275av8_I_DT53_DA54BBBBB01750.19 BB01
1285av8_I_DA54_DT55BBBBB01570.29 BB01
1295av8_I_DT55_DC56BBBBB00680.23 BB00
1305av8_I_DC56_DT57BBBBB00620.27 BB00
1315av8_I_DT57_DG58BB2BB07870.21 BB07
1325av8_I_DG58_DC59BBBBB00610.17 BB00
1335av8_I_DC59_DA60BB2BB07890.20 BB07
1345av8_I_DA60_DG61BBBBB00760.24 BB00
1355av8_I_DG61_DG62B12BB04490.20 BB04
1365av8_I_DG62_DT63B-ABA01270.24 BA01
1375av8_I_DT63_DG64A-BAB03380.18 AB03
1385av8_I_DG64_DG65B12BB04640.38 BB04
1395av8_I_DG65_DA66B12BB04770.18 BB04
1405av8_I_DA66_DT67BBBBB00730.31 BB00
1415av8_I_DT67_DA68NANNANT00.34 BB07
1425av8_I_DA68_DT69BBBBB00570.19 BB00
1435av8_I_DT69_DT70BBBBB01880.18 BB01
1445av8_I_DT70_DG71BBBBB00720.23 BB00
1455av8_I_DG71_DA72B-ABA08770.23 BA08
1465av8_I_DA72_DT73NANNANT00.38 BA10
1475av8_J_DA-73_DT-72A-BAB05580.15 AB05
1485av8_J_DT-72_DC-71BBBBB00670.29 BB00
1495av8_J_DC-71_DA-70B12BB04870.19 BB04
1505av8_J_DA-70_DA-69B12BB04830.18 BB04
1515av8_J_DA-69_DT-68BBwBB02270.28 BB02
1525av8_J_DT-68_DA-67BBBBB00730.23 BB00
1535av8_J_DA-67_DT-66BBBBB00860.17 BB00
1545av8_J_DT-66_DC-65BBBBB00100.27 BB00
1555av8_J_DC-65_DC-64BBBBB00280.28 BB00
1565av8_J_DC-64_DA-63BBBBB00920.17 BB00
1575av8_J_DA-63_DC-62BBBBB00500.23 BB00
1585av8_J_DC-62_DC-61BBBBB01880.13 BB01
1595av8_J_DC-61_DT-60BBBBB00550.21 BB00
1605av8_J_DT-60_DG-59B12BB04850.24 BB04
1615av8_J_DG-59_DC-58BBBBB00890.23 BB00
1625av8_J_DC-58_DA-57BB2BB07750.27 BB07
1635av8_J_DA-57_DG-56B12BB04170.44 BB04
1645av8_J_DG-56_DA-55B12BB04640.17 BB04
1655av8_J_DA-55_DT-54BBBBB01330.20 BB01
1665av8_J_DT-54_DA-53A-BAB03450.24 AB03
1675av8_J_DA-53_DC-52BBBBB01200.31 BB01
1685av8_J_DC-52_DT-51BBBBB01530.34 BB01
1695av8_J_DT-51_DA-50BBBBB01610.26 BB01
1705av8_J_DA-50_DC-49B12BB04460.29 BB04
1715av8_J_DC-49_DC-48BBBBB00580.27 BB00
1725av8_J_DC-48_DA-47BB2BB07660.31 BB07
1735av8_J_DA-47_DA-46miBBB10520.38 BB10
1745av8_J_DA-46_DA-45miBBB10420.35 BB10
1755av8_J_DA-45_DA-44B-ABA08670.34 BA08
1765av8_J_DA-44_DG-43BBBBB01600.26 BB01
1775av8_J_DG-43_DT-42BBBBB00820.16 BB00
1785av8_J_DT-42_DG-41BBBBB00110.26 BB00
1795av8_J_DG-41_DT-40BBBBB00300.27 BB00
1805av8_J_DT-40_DA-39BBBBB00830.17 BB00
1815av8_J_DA-39_DT-38BBBBB01870.17 BB01
1825av8_J_DT-38_DT-37BBBBB01540.22 BB01
1835av8_J_DT-37_DT-36B12BB04610.31 BB04
1845av8_J_DT-36_DG-35BB2BB07720.33 BB07
1855av8_J_DG-35_DG-34BBBBB00620.30 BB00
1865av8_J_DG-34_DA-33BB2BB07870.29 BB07
1875av8_J_DA-33_DA-32BBBBB00940.18 BB00
1885av8_J_DA-32_DA-31BBBBB00160.23 BB00
1895av8_J_DA-31_DC-30BBBBB00380.17 BB00
1905av8_J_DC-30_DT-29BBBBB00930.21 BB00
1915av8_J_DT-29_DG-28BB2BB07800.24 BB07
1925av8_J_DG-28_DC-27BBBBB00720.29 BB00
1935av8_J_DC-27_DT-26BB2BB07680.33 BB07
1945av8_J_DT-26_DC-25BBBBB00670.35 BB00
1955av8_J_DC-25_DC-24BB2BB07480.22 BB07
1965av8_J_DC-24_DA-23BBBBB00770.26 BB00
1975av8_J_DA-23_DT-22BBBBB00290.27 BB00
1985av8_J_DT-22_DC-21B-ABA08690.27 BA08
1995av8_J_DC-21_DA-20A-BAB01350.28 AB01
2005av8_J_DA-20_DA-19miBBB10520.24 BB10
2015av8_J_DA-19_DA-18B12BB04700.16 BB04
2025av8_J_DA-18_DA-17BBBBB00800.16 BB00
2035av8_J_DA-17_DG-16BB2BB07670.17 BB07
2045av8_J_DG-16_DG-15BB2BB07900.23 BB07
2055av8_J_DG-15_DC-14BBBBB00790.22 BB00
2065av8_J_DC-14_DA-13B12BB04790.18 BB04
2075av8_J_DA-13_DT-12BBBBB00800.14 BB00
2085av8_J_DT-12_DG-11BBBBB00770.20 BB00
2095av8_J_DG-11_DT-10BBBBB00150.29 BB00
2105av8_J_DT-10_DT-9BBBBB00360.21 BB00
2115av8_J_DT-9_DC-8BBBBB01490.24 BB01
2125av8_J_DC-8_DA-7BBBBB00220.30 BB00
2135av8_J_DA-7_DG-6BB2BB07870.26 BB07
2145av8_J_DG-6_DC-5BBBBB00800.23 BB00
2155av8_J_DC-5_DT-4B-ABA17910.18 BA17
2165av8_J_DT-4_DG-3A-BAB03510.24 AB03
2175av8_J_DG-3_DG-2BBBBB00890.14 BB00
2185av8_J_DG-2_DA-1B-ABA08480.31 BA08
2195av8_J_DA-1_DT0BBBBB01500.23 BB01
2205av8_J_DT0_DT1BBBBB01710.19 BB01
2215av8_J_DT1_DC2BBBBB01630.18 BB01
2225av8_J_DC2_DC3BBBBB00500.32 BB00
2235av8_J_DC3_DA4BB2BB07950.19 BB07
2245av8_J_DA4_DG5BBBBB00660.21 BB00
2255av8_J_DG5_DC6BB2BB07880.15 BB07
2265av8_J_DC6_DT7NANNANT00.48 BA08
2275av8_J_DT7_DG8BBBBB00390.48 BB00
2285av8_J_DG8_DA9BBBBB00870.17 BB00
2295av8_J_DA9_DA10BBBBB00720.15 BB00
2305av8_J_DA10_DC11BBBBB00780.17 BB00
2315av8_J_DC11_DA12B12BB04870.15 BB04
2325av8_J_DA12_DT13NANNANT00.34 BB02
2335av8_J_DT13_DG14BBBBB00450.48 BB00
2345av8_J_DG14_DC15BB2BB07460.30 BB07
2355av8_J_DC15_DC16B12BB04770.37 BB04
2365av8_J_DC16_DT17BB2BB07780.19 BB07
2375av8_J_DT17_DT18BBBBB00890.13 BB00
2385av8_J_DT18_DT19BBBBB01150.25 BB01
2395av8_J_DT19_DT20BBBBB00110.43 BB00
2405av8_J_DT20_DG21NANNANT00.46 BB07
2415av8_J_DG21_DA22B12BB04470.25 BB04
2425av8_J_DA22_DT23NANNANT00.43 BB10
2435av8_J_DT23_DG24BBwBB11690.28 BB11
2445av8_J_DG24_DG25BBBBB00560.50 BB00
2455av8_J_DG25_DA26BB2BB07880.30 BB07
2465av8_J_DA26_DG27BBBBB00660.34 BB00
2475av8_J_DG27_DC28BB2BB07900.16 BB07
2485av8_J_DC28_DA29BBBBB00720.32 BB00
2495av8_J_DA29_DG30B12BB04730.17 BB04
2505av8_J_DG30_DT31BBBBB00730.22 BB00
2515av8_J_DT31_DT32BBBBB00940.14 BB00
2525av8_J_DT32_DT33BBBBB00740.16 BB00
2535av8_J_DT33_DC34BBBBB00650.31 BB00
2545av8_J_DC34_DC35BB2BB07610.23 BB07
2555av8_J_DC35_DA36BB2BB07840.32 BB07
2565av8_J_DA36_DA37BBBBB00790.16 BB00
2575av8_J_DA37_DA38B-ABA08900.18 BA08
2585av8_J_DA38_DT39A-BAB01810.21 AB01
2595av8_J_DT39_DA40BBBBB00760.23 BB00
2605av8_J_DA40_DC41BBBBB00440.17 BB00
2615av8_J_DC41_DA42B12BB04720.16 BB04
2625av8_J_DA42_DC43BBBBB01540.17 BB01
2635av8_J_DC43_DT44BBBBB00110.29 BB00
2645av8_J_DT44_DT45BBBBB00710.24 BB00
2655av8_J_DT45_DT46B-ABA08410.46 BA08
2665av8_J_DT46_DT47A-BAB03820.27 AB03
2675av8_J_DT47_DG48B12BB04380.41 BB04
2685av8_J_DG48_DG49B12BB04720.22 BB04
2695av8_J_DG49_DT50BBBBB00600.22 BB00
2705av8_J_DT50_DA51NANNANT00.45 BA08
2715av8_J_DA51_DG52BBBBB01600.22 BB01
2725av8_J_DG52_DT53NANNANT00.48 BA10
2735av8_J_DT53_DA54BBwBB02200.42 BB02
2745av8_J_DA54_DT55BBBBB00190.34 BB00
2755av8_J_DT55_DC56BBwBB11650.18 BB11
2765av8_J_DC56_DT57BBBBB00340.52 BB00
2775av8_J_DT57_DG58BB2BB07910.25 BB07
2785av8_J_DG58_DC59BBBBB00690.21 BB00
2795av8_J_DC59_DA60BB2BB07890.19 BB07
2805av8_J_DA60_DG61BBBBB00810.26 BB00
2815av8_J_DG61_DG62B12BB04180.24 BB04
2825av8_J_DG62_DT63BBBBB01730.16 BB01
2835av8_J_DT63_DG64BBBBB00370.17 BB00
2845av8_J_DG64_DG65B12BB04320.33 BB04
2855av8_J_DG65_DA66B12BB04820.19 BB04
2865av8_J_DA66_DT67BBBBB00690.22 BB00
2875av8_J_DT67_DA68BBBBB00700.28 BB00
2885av8_J_DA68_DT69BBBBB00880.20 BB00
2895av8_J_DT69_DT70BBBBB01720.21 BB01
2905av8_J_DT70_DG71BBBBB00720.21 BB00
2915av8_J_DG71_DA72B12BB04770.14 BB04
2925av8_J_DA72_DT73B-ABA05900.18 BA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N