Conformers:
ABBIImiBZICOPNSYNN
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Crystal structure of the homing endonuclease I-CvuI in complex with its target (Sro1.3) in the presence of 2 mM Ca
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 46 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 5a72_C_DT501_DC502 | NAN | NANT | 0 | 0.42 |
| 02 | 5a72_C_DC502_DA503 | BBw | BB16 | 59 | 0.38 |
| 03 | 5a72_C_DA503_DG504 | BB2 | BB07 | 37 | 0.36 |
| 04 | 5a72_C_DG504_DA505 | BBB | BB00 | 47 | 0.25 |
| 05 | 5a72_C_DA505_DA506 | B-A | BA05 | 77 | 0.20 |
| 06 | 5a72_C_DA506_DC507 | B-A | BA05 | 41 | 0.41 |
| 07 | 5a72_C_DC507_DG508 | A-B | AB03 | 57 | 0.46 |
| 08 | 5a72_C_DG508_DT509 | BBB | BB00 | 52 | 0.24 |
| 09 | 5a72_C_DT509_DC510 | BB2 | BB07 | 68 | 0.30 |
| 10 | 5a72_C_DC510_DG511 | BBB | BB00 | 84 | 0.23 |
| 11 | 5a72_C_DG511_DT512 | B12 | BB04 | 67 | 0.31 |
| 12 | 5a72_C_DT512_DA513 | BB2 | BB07 | 54 | 0.35 |
| 13 | 5a72_C_DA513_DC514 | NAN | NANT | 0 | 0.50 |
| 14 | 5a72_C_DC514_DG515 | NAN | NANT | 0 | 1.11 |
| 15 | 5a72_C_DG515_DA516 | BBB | BB00 | 66 | 0.37 |
| 16 | 5a72_C_DA516_DC517 | B-A | BA09 | 77 | 0.18 |
| 17 | 5a72_C_DC517_DG518 | A-B | AB05 | 68 | 0.22 |
| 18 | 5a72_C_DG518_DT519 | BBB | BB00 | 64 | 0.32 |
| 19 | 5a72_C_DT519_DT520 | BBB | BB00 | 40 | 0.28 |
| 20 | 5a72_C_DT520_DC521 | BBB | BB00 | 78 | 0.22 |
| 21 | 5a72_C_DC521_DT522 | B-A | BA05 | 76 | 0.15 |
| 22 | 5a72_C_DT522_DG523 | A-B | AB03 | 79 | 0.27 |
| 23 | 5a72_C_DG523_DA524 | BB2 | BB07 | 83 | 0.20 |
| 24 | 5a72_D_DT601_DC602 | NAN | NANT | 0 | 0.44 |
| 25 | 5a72_D_DC602_DA603 | BBB | BB00 | 37 | 0.47 |
| 26 | 5a72_D_DA603_DG604 | BB2 | BB07 | 39 | 0.37 |
| 27 | 5a72_D_DG604_DA605 | BBB | BB00 | 67 | 0.24 |
| 28 | 5a72_D_DA605_DA606 | B-A | BA05 | 61 | 0.26 |
| 29 | 5a72_D_DA606_DC607 | B-A | BA05 | 28 | 0.38 |
| 30 | 5a72_D_DC607_DG608 | A-B | AB03 | 46 | 0.46 |
| 31 | 5a72_D_DG608_DT609 | BBB | BB00 | 61 | 0.23 |
| 32 | 5a72_D_DT609_DC610 | BB2 | BB07 | 71 | 0.26 |
| 33 | 5a72_D_DC610_DG611 | BBB | BB00 | 82 | 0.25 |
| 34 | 5a72_D_DG611_DT612 | B12 | BB04 | 56 | 0.33 |
| 35 | 5a72_D_DT612_DA613 | BB2 | BB07 | 40 | 0.39 |
| 36 | 5a72_D_DA613_DC614 | miB | BB12 | 75 | 0.13 |
| 37 | 5a72_D_DC614_DG615 | NAN | NANT | 0 | 1.07 |
| 38 | 5a72_D_DG615_DA616 | BBB | BB00 | 66 | 0.39 |
| 39 | 5a72_D_DA616_DC617 | B-A | BA09 | 83 | 0.20 |
| 40 | 5a72_D_DC617_DG618 | A-B | AB05 | 71 | 0.23 |
| 41 | 5a72_D_DG618_DT619 | BBB | BB00 | 61 | 0.33 |
| 42 | 5a72_D_DT619_DT620 | BBB | BB00 | 57 | 0.27 |
| 43 | 5a72_D_DT620_DC621 | BBB | BB01 | 72 | 0.15 |
| 44 | 5a72_D_DC621_DT622 | BBB | BB01 | 77 | 0.19 |
| 45 | 5a72_D_DT622_DG623 | BBB | BB00 | 33 | 0.28 |
| 46 | 5a72_D_DG623_DA624 | BB2 | BB07 | 78 | 0.22 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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