Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Antitoxin Phd from phage P1 in complex with its operator DNA inverted repeat
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 50 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4zm0_E_DC2_DT3 | NAN | NANT | 0 | 0.93 |
| 02 | 4zm0_E_DT3_DT4 | A-B | AB03 | 78 | 0.24 |
| 03 | 4zm0_E_DT4_DG5 | B12 | BB04 | 69 | 0.28 |
| 04 | 4zm0_E_DG5_DT6 | BBB | BB00 | 11 | 0.35 |
| 05 | 4zm0_E_DT6_DG7 | BBB | BB01 | 72 | 0.29 |
| 06 | 4zm0_E_DG7_DT8 | B-A | BA05 | 74 | 0.25 |
| 07 | 4zm0_E_DT8_DA9 | miB | BB10 | 18 | 0.26 |
| 08 | 4zm0_E_DA9_DC10 | miB | BB10 | 79 | 0.33 |
| 09 | 4zm0_E_DC10_DA11 | BBB | BB00 | 57 | 0.29 |
| 10 | 4zm0_E_DA11_DC12 | B12 | BB04 | 29 | 0.23 |
| 11 | 4zm0_E_DC12_DA13 | BBB | BB00 | 61 | 0.27 |
| 12 | 4zm0_E_DA13_DT14 | B-A | BA01 | 20 | 0.29 |
| 13 | 4zm0_F_DC1_DA2 | BBB | BB00 | 84 | 0.18 |
| 14 | 4zm0_F_DA2_DT3 | BBB | BB00 | 91 | 0.15 |
| 15 | 4zm0_F_DT3_DG4 | B12 | BB04 | 71 | 0.23 |
| 16 | 4zm0_F_DG4_DT5 | BBB | BB00 | 51 | 0.25 |
| 17 | 4zm0_F_DT5_DG6 | B12 | BB04 | 51 | 0.18 |
| 18 | 4zm0_F_DG6_DT7 | BBB | BB01 | 54 | 0.32 |
| 19 | 4zm0_F_DT7_DA8 | miB | BB10 | 34 | 0.26 |
| 20 | 4zm0_F_DA8_DC9 | B-A | BA08 | 73 | 0.27 |
| 21 | 4zm0_F_DC9_DA10 | A-B | AB03 | 74 | 0.26 |
| 22 | 4zm0_F_DA10_DC11 | B12 | BB04 | 25 | 0.25 |
| 23 | 4zm0_F_DC11_DA12 | BBB | BB00 | 53 | 0.26 |
| 24 | 4zm0_F_DA12_DA13 | BBB | BB00 | 80 | 0.20 |
| 25 | 4zm0_G_DG1_DC2 | NAN | NANT | 0 | 0.45 |
| 26 | 4zm0_G_DC2_DT3 | A-B | AB05 | 22 | 0.22 |
| 27 | 4zm0_G_DT3_DT4 | BBB | BB00 | 81 | 0.23 |
| 28 | 4zm0_G_DT4_DG5 | B12 | BB04 | 67 | 0.26 |
| 29 | 4zm0_G_DG5_DT6 | BBB | BB00 | 13 | 0.33 |
| 30 | 4zm0_G_DT6_DG7 | BBB | BB01 | 74 | 0.28 |
| 31 | 4zm0_G_DG7_DT8 | B-A | BA05 | 74 | 0.24 |
| 32 | 4zm0_G_DT8_DA9 | miB | BB10 | 17 | 0.27 |
| 33 | 4zm0_G_DA9_DC10 | miB | BB10 | 78 | 0.33 |
| 34 | 4zm0_G_DC10_DA11 | BBB | BB00 | 57 | 0.29 |
| 35 | 4zm0_G_DA11_DC12 | B12 | BB04 | 37 | 0.24 |
| 36 | 4zm0_G_DC12_DA13 | BBB | BB00 | 64 | 0.26 |
| 37 | 4zm0_G_DA13_DT14 | B-A | BA01 | 27 | 0.23 |
| 38 | 4zm0_H_DC1_DA2 | NAN | NANT | 0 | 0.81 |
| 39 | 4zm0_H_DA2_DT3 | BBB | BB00 | 92 | 0.14 |
| 40 | 4zm0_H_DT3_DG4 | B12 | BB04 | 74 | 0.23 |
| 41 | 4zm0_H_DG4_DT5 | BBB | BB00 | 48 | 0.27 |
| 42 | 4zm0_H_DT5_DG6 | B12 | BB04 | 54 | 0.18 |
| 43 | 4zm0_H_DG6_DT7 | BBB | BB01 | 55 | 0.32 |
| 44 | 4zm0_H_DT7_DA8 | miB | BB10 | 35 | 0.26 |
| 45 | 4zm0_H_DA8_DC9 | B-A | BA08 | 73 | 0.27 |
| 46 | 4zm0_H_DC9_DA10 | A-B | AB03 | 74 | 0.25 |
| 47 | 4zm0_H_DA10_DC11 | B12 | BB04 | 19 | 0.25 |
| 48 | 4zm0_H_DC11_DA12 | BBB | BB00 | 50 | 0.26 |
| 49 | 4zm0_H_DA12_DA13 | BBB | BB00 | 79 | 0.20 |
| 50 | 4zm0_H_DA13_DG14 | NAN | NANT | 0 | 0.66 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| visible |
| Color by NtC (balls) |
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| A-B | ||||
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| B | ||||
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