Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structural basis of asymmetric DNA methylation and ATP-triggered long-range diffusion by EcoP15I
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4zcf_D_DA1_DT2 | NAN | NANT | 0 | 0.45 |
| 02 | 4zcf_D_DT2_DA3 | BBB | BB01 | 71 | 0.19 |
| 03 | 4zcf_D_DA3_DC4 | B12 | BB04 | 17 | 0.22 |
| 04 | 4zcf_D_DC4_DA5 | BBB | BB00 | 54 | 0.26 |
| 05 | 4zcf_D_DA5_DG6 | B-A | BA01 | 12 | 0.35 |
| 06 | 4zcf_D_DG6_DC7 | NAN | NANT | 0 | 0.40 |
| 07 | 4zcf_D_DC7_DA8 | NAN | NANT | 0 | 1.14 |
| 08 | 4zcf_D_DA8_DG9 | NAN | NANT | 0 | 1.75 |
| 09 | 4zcf_D_DG9_DT10 | A-B | AB04 | 46 | 0.32 |
| 10 | 4zcf_D_DT10_DA11 | BBB | BB01 | 44 | 0.34 |
| 11 | 4zcf_D_DA11_DG12 | BBB | BB00 | 44 | 0.22 |
| 12 | 4zcf_D_DG12_DA13 | BB2 | BB07 | 30 | 0.24 |
| 13 | 4zcf_D_DA13_DC14 | B-A | BA05 | 84 | 0.26 |
| 14 | 4zcf_D_DC14_DT15 | BBB | BB01 | 49 | 0.27 |
| 15 | 4zcf_D_DT15_DA16 | BBB | BB00 | 60 | 0.27 |
| 16 | 4zcf_D_DA16_DT17 | BBB | BB01 | 53 | 0.32 |
| 17 | 4zcf_D_DT17_DG18 | miB | BB10 | 64 | 0.23 |
| 18 | 4zcf_D_DG18_DA19 | B-A | BA08 | 64 | 0.25 |
| 19 | 4zcf_D_DA19_DT20 | A-B | AB01 | 37 | 0.24 |
| 20 | 4zcf_E_DA1_DA2 | NAN | NANT | 0 | 0.67 |
| 21 | 4zcf_E_DA2_DT3 | miB | BB12 | 66 | 0.38 |
| 22 | 4zcf_E_DT3_DC4 | BBw | BB16 | 74 | 0.48 |
| 23 | 4zcf_E_DC4_DA5 | NAN | NANT | 0 | 0.36 |
| 24 | 4zcf_E_DA5_DT6 | BBB | BB00 | 75 | 0.21 |
| 25 | 4zcf_E_DT6_DA7 | BBB | BB00 | 78 | 0.19 |
| 26 | 4zcf_E_DA7_DG8 | BBB | BB00 | 77 | 0.19 |
| 27 | 4zcf_E_DG8_DT9 | B12 | BB04 | 62 | 0.21 |
| 28 | 4zcf_E_DT9_DC10 | BBB | BB00 | 73 | 0.28 |
| 29 | 4zcf_E_DC10_DT11 | BB2 | BB07 | 80 | 0.34 |
| 30 | 4zcf_E_DT11_DA12 | BBB | BB00 | 62 | 0.41 |
| 31 | 4zcf_E_DA12_DC13 | NAN | NANT | 0 | 0.45 |
| 32 | 4zcf_E_DC13_DT14 | NAN | NANT | 0 | 0.45 |
| 33 | 4zcf_E_DT14_DG15 | BBw | BB16 | 37 | 0.30 |
| 34 | 4zcf_E_DG15_DC16 | BB2 | BB07 | 60 | 0.33 |
| 35 | 4zcf_E_DC16_DT17 | BBB | BB00 | 22 | 0.41 |
| 36 | 4zcf_E_DT17_DG18 | BB2 | BB07 | 35 | 0.45 |
| 37 | 4zcf_E_DG18_DT19 | BBB | BB00 | 68 | 0.20 |
| 38 | 4zcf_E_DT19_DA20 | BBB | BB00 | 46 | 0.35 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|