DNATCO v4.1: results

Crystal Structure of H. influenzae TrmD in complex with sinefungin and tRNA variant (G36C)

Results of the assignment of 70 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	4yvk_C_U1_G2	NAN	NANT	0	0.92	OP02
02	4yvk_C_G2_G3	NAN	NANT	0	0.68	AA01
03	4yvk_C_G3_G4	AAw	AA01	72	0.25	AA01
04	4yvk_C_G4_A5	AAA	AA08	75	0.21	AA08
05	4yvk_C_A5_G6	AAA	AA00	82	0.29	AA00
06	4yvk_C_G6_G7	NAN	NANT	0	0.52	AA01
07	4yvk_C_G7_U8	OPN	OP11	51	0.43	OP11
08	4yvk_C_U8_C9	NAN	NANT	0	0.54	IC07
09	4yvk_C_C9_G10	NAN	NANT	0	1.24	OP12
10	4yvk_C_G10_U11	AAA	AA00	78	0.14	AA00
11	4yvk_C_U11_C12	AAA	AA00	48	0.23	AA00
12	4yvk_C_C12_U13	AAA	AA04	30	0.39	AA04
13	4yvk_C_U13_A14	AAw	AA01	40	0.44	AA01
14	4yvk_C_A14_A15	AAA	AA00	21	0.40	AA00
15	4yvk_C_A15_C16	NAN	NANT	0	1.05	OP06
16	4yvk_C_C16_G18	NAN	NANT	0	1.90	OP09
17	4yvk_C_G18_G19	NAN	NANT	0	0.44	IC05
18	4yvk_C_G19_U20	NAN	NANT	0	0.84	OP16
19	4yvk_C_U20_A21	NAN	NANT	0	0.65	OP17
20	4yvk_C_A21_G22	NAN	NANT	0	0.71	IC07
21	4yvk_C_G22_G23	AAA	AA00	77	0.17	AA00
22	4yvk_C_G23_A24	AAA	AA00	80	0.13	AA00
23	4yvk_C_A24_C25	AAA	AA08	87	0.11	AA08
24	4yvk_C_C25_G26	AAA	AA00	81	0.36	AA00
25	4yvk_C_G26_G27	AAA	AA00	32	0.32	AA00
26	4yvk_C_G27_C28	AAA	AA00	91	0.13	AA00
27	4yvk_C_C28_G29	AAA	AA00	83	0.23	AA00
28	4yvk_C_G29_G30	AAA	AA00	49	0.33	AA00
29	4yvk_C_G30_A31	AAw	AA01	25	0.34	AA01
30	4yvk_C_A31_C32	NAN	NANT	0	0.39	AA10
31	4yvk_C_C32_U33	NAN	NANT	0	1.71	AA05
32	4yvk_C_U33_C34	NAN	NANT	0	0.89	OP01
33	4yvk_C_C34_U35	NAN	NANT	0	0.75	OP09
34	4yvk_C_U35_C36	NAN	NANT	0	0.84	IC03
35	4yvk_C_C36_G37	NAN	NANT	0	0.79	OP14
36	4yvk_C_G37_A38	OPN	OP11	89	0.21	OP11
37	4yvk_C_A38_U39	AAA	AA00	85	0.31	AA00
38	4yvk_C_U39_C40	AAw	AA01	47	0.20	AA01
39	4yvk_C_C40_C41	AAA	AA03	75	0.29	AA03
40	4yvk_C_C41_G42	AAw	AA06	73	0.19	AA06
41	4yvk_C_G42_C43	AAA	AA00	67	0.23	AA00
42	4yvk_C_C43_U44	AAA	AA00	71	0.34	AA00
43	4yvk_C_U44_G45	AAA	AA08	39	0.37	AA08
44	4yvk_C_G45_G46	NAN	NANT	0	0.81	AA07
45	4yvk_C_G46_U48	NAN	NANT	0	0.61	IC04
46	4yvk_C_U48_G49	NAN	NANT	0	1.49	OP06
47	4yvk_C_G49_G50	AAA	AA00	61	0.29	AA00
48	4yvk_C_G50_A51	AAw	AA01	88	0.24	AA01
49	4yvk_C_A51_G52	AAw	AA11	51	0.41	AA11
50	4yvk_C_G52_G53	AAA	AA08	81	0.25	AA08
51	4yvk_C_G53_U54	AAA	AA00	88	0.16	AA00
52	4yvk_C_U54_U55	AAA	AA00	41	0.40	AA00
53	4yvk_C_U55_C56	OPN	OP04	75	0.17	OP04
54	4yvk_C_C56_G57	AAw	AA06	85	0.36	AA06
55	4yvk_C_G57_A58	ICL	IC01	75	0.47	IC01
56	4yvk_C_A58_G59	NAN	NANT	0	0.30	OP25
57	4yvk_C_G59_U60	A-B	AB05	78	0.43	AB05
58	4yvk_C_U60_C61	NAN	NANT	0	0.17	OP12
59	4yvk_C_C61_C62	AAA	AA00	27	0.30	AA00
60	4yvk_C_C62_U63	AAA	AA00	75	0.20	AA00
61	4yvk_C_U63_C64	AAA	AA00	85	0.15	AA00
62	4yvk_C_C64_C65	AAA	AA00	92	0.15	AA00
63	4yvk_C_C65_C66	AAA	AA00	92	0.23	AA00
64	4yvk_C_C66_C67	AAA	AA00	88	0.17	AA00
65	4yvk_C_C67_U68	AAA	AA00	94	0.16	AA00
66	4yvk_C_U68_C69	AAA	AA00	90	0.17	AA00
67	4yvk_C_C69_C70	AAA	AA00	92	0.11	AA00
68	4yvk_C_C70_C71	AAA	AA00	79	0.26	AA00
69	4yvk_C_C71_A72	NAN	NANT	0	1.58	IC07
70	4yvk_C_A72_G73	NAN	NANT	0	1.67	OP17

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 70 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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