DNATCO v4.1: results

Crystal Structure of H. influenzae TrmD in complex with sinefungin and tRNA variant (G36U)

Results of the assignment of 70 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	4yvj_C_U1_G2	NAN	NANT	0	0.93	OP02
02	4yvj_C_G2_G3	NAN	NANT	0	0.74	AA01
03	4yvj_C_G3_G4	AAw	AA01	69	0.31	AA01
04	4yvj_C_G4_A5	AAA	AA08	73	0.25	AA08
05	4yvj_C_A5_G6	AAA	AA00	82	0.29	AA00
06	4yvj_C_G6_G7	NAN	NANT	0	0.51	AA01
07	4yvj_C_G7_U8	OPN	OP11	49	0.43	OP11
08	4yvj_C_U8_C9	NAN	NANT	0	0.54	IC07
09	4yvj_C_C9_G10	NAN	NANT	0	1.25	OP12
10	4yvj_C_G10_U11	AAA	AA00	80	0.15	AA00
11	4yvj_C_U11_C12	AAA	AA00	50	0.22	AA00
12	4yvj_C_C12_U13	AAA	AA04	30	0.38	AA04
13	4yvj_C_U13_A14	AAw	AA01	40	0.44	AA01
14	4yvj_C_A14_A15	AAA	AA00	18	0.42	AA00
15	4yvj_C_A15_C16	NAN	NANT	0	1.19	OP28
16	4yvj_C_C16_G18	NAN	NANT	0	1.91	OP09
17	4yvj_C_G18_G19	NAN	NANT	0	0.48	IC05
18	4yvj_C_G19_U20	NAN	NANT	0	0.87	OP16
19	4yvj_C_U20_A21	NAN	NANT	0	0.58	OP17
20	4yvj_C_A21_G22	NAN	NANT	0	0.72	IC07
21	4yvj_C_G22_G23	AAA	AA00	74	0.20	AA00
22	4yvj_C_G23_A24	AAA	AA00	72	0.17	AA00
23	4yvj_C_A24_C25	AAA	AA08	85	0.11	AA08
24	4yvj_C_C25_G26	AAA	AA00	82	0.37	AA00
25	4yvj_C_G26_G27	AAA	AA00	31	0.31	AA00
26	4yvj_C_G27_C28	AAA	AA00	94	0.11	AA00
27	4yvj_C_C28_G29	AAA	AA00	83	0.23	AA00
28	4yvj_C_G29_G30	AAA	AA08	72	0.35	AA08
29	4yvj_C_G30_A31	AAw	AA06	54	0.29	AA06
30	4yvj_C_A31_C32	NAN	NANT	0	0.47	AA10
31	4yvj_C_C32_U33	NAN	NANT	0	1.72	AA05
32	4yvj_C_U33_C34	NAN	NANT	0	2.16	OP18
33	4yvj_C_C34_U35	NAN	NANT	0	0.69	OP09
34	4yvj_C_U35_U36	NAN	NANT	0	1.07	IC03
35	4yvj_C_U36_G37	NAN	NANT	0	0.53	OP13
36	4yvj_C_G37_A38	OPN	OP11	81	0.23	OP11
37	4yvj_C_A38_U39	AAA	AA00	84	0.27	AA00
38	4yvj_C_U39_C40	AAw	AA10	59	0.15	AA10
39	4yvj_C_C40_C41	AAA	AA03	74	0.31	AA03
40	4yvj_C_C41_G42	AAw	AA06	71	0.19	AA06
41	4yvj_C_G42_C43	AAA	AA00	63	0.26	AA00
42	4yvj_C_C43_U44	AAA	AA00	61	0.29	AA00
43	4yvj_C_U44_G45	AAA	AA09	80	0.30	AA09
44	4yvj_C_G45_G46	NAN	NANT	0	0.58	AA13
45	4yvj_C_G46_U48	NAN	NANT	0	0.62	IC04
46	4yvj_C_U48_G49	NAN	NANT	0	1.51	OP06
47	4yvj_C_G49_G50	AAA	AA00	67	0.28	AA00
48	4yvj_C_G50_A51	AAw	AA01	88	0.23	AA01
49	4yvj_C_A51_G52	AAw	AA11	50	0.40	AA11
50	4yvj_C_G52_G53	AAA	AA08	82	0.27	AA08
51	4yvj_C_G53_U54	AAA	AA00	87	0.17	AA00
52	4yvj_C_U54_U55	AAA	AA00	38	0.41	AA00
53	4yvj_C_U55_C56	OPN	OP04	73	0.20	OP04
54	4yvj_C_C56_G57	AAw	AA01	68	0.28	AA01
55	4yvj_C_G57_A58	ICL	IC01	75	0.47	IC01
56	4yvj_C_A58_G59	NAN	NANT	0	0.28	OP25
57	4yvj_C_G59_U60	A-B	AB05	82	0.40	AB05
58	4yvj_C_U60_C61	NAN	NANT	0	0.21	OP12
59	4yvj_C_C61_C62	AAA	AA00	29	0.28	AA00
60	4yvj_C_C62_U63	AAA	AA00	82	0.17	AA00
61	4yvj_C_U63_C64	AAA	AA00	87	0.15	AA00
62	4yvj_C_C64_C65	AAA	AA00	93	0.13	AA00
63	4yvj_C_C65_C66	AAA	AA00	89	0.23	AA00
64	4yvj_C_C66_C67	AAA	AA00	95	0.14	AA00
65	4yvj_C_C67_U68	AAA	AA00	94	0.15	AA00
66	4yvj_C_U68_C69	AAA	AA00	83	0.22	AA00
67	4yvj_C_C69_C70	AAA	AA00	87	0.15	AA00
68	4yvj_C_C70_C71	AAA	AA00	60	0.29	AA00
69	4yvj_C_C71_A72	NAN	NANT	0	1.72	IC03
70	4yvj_C_A72_G73	NAN	NANT	0	1.73	OP17

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 70 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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