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Conformers: ABBIImiBZICOPNSYNN
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Heterodimeric complex of transcription factors MEIS1 and DLX3 on specific DNA

Results of the assignment of 62 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
014xrs_M_DC21_DA22NANNANT00.95 BB00
024xrs_M_DA22_DA23NANNANT00.58 BA10
034xrs_M_DA23_DT24NANNANT00.76 AA05
044xrs_M_DT24_DT25NANNANT00.58 AA10
054xrs_M_DT25_DA26NANNANT00.33 BB03
064xrs_M_DA26_DT27NANNANT00.48 BA10
074xrs_M_DT27_DC28NANNANT00.68 AA11
084xrs_M_DC28_DC29AAAAA02350.68 AA02
094xrs_M_DC29_DT30NANNANT00.68 AA10
104xrs_M_DT30_DG31AAwAA05340.48 AA05
114xrs_M_DG31_DT32NANNANT00.82 AA10
124xrs_M_DT32_DC33NANNANT00.83 IC04
134xrs_M_DC33_DA34NANNANT00.50 BB03
144xrs_M_DA34_DA35NANNANT00.77 IC03
154xrs_D_DA20_DC21NANNANT00.64 BB03
164xrs_D_DC21_DA22NANNANT00.45 BB03
174xrs_D_DA22_DA23BBBBB01290.46 BB01
184xrs_D_DA23_DT24NANNANT00.60 BB02
194xrs_D_DT24_DT25NANNANT01.19 AB02
204xrs_D_DT25_DA26NANNANT00.75 IC04
214xrs_D_DA26_DT27NANNANT00.54 BA10
224xrs_D_DT27_DC28NANNANT00.56 BA10
234xrs_D_DC28_DC29AAAAA02250.53 AA02
244xrs_D_DC29_DT30NANNANT00.42 BB03
254xrs_D_DT30_DG31NANNANT00.57 BA10
264xrs_D_DG31_DT32NANNANT00.45 AA01
274xrs_D_DT32_DC33NANNANT00.33 AB01
284xrs_D_DC33_DA34NANNANT01.00 BA10
294xrs_D_DA34_DA35NANNANT00.49 AA01
304xrs_D_DA35_DC36NANNANT00.78 BB02
314xrs_E_DG1_DT2NANNANT00.94 AA11
324xrs_E_DT2_DT3NANNANT00.53 IC01
334xrs_E_DT3_DG4NANNANT00.40 BB03
344xrs_E_DG4_DA5NANNANT00.67 BB03
354xrs_E_DA5_DC6AAAAA04330.58 AA04
364xrs_E_DC6_DA7NANNANT00.44 AA01
374xrs_E_DA7_DG8NANNANT00.48 AA04
384xrs_E_DG8_DG9NANNANT00.55 BB03
394xrs_E_DG9_DA10NANNANT00.33 BB03
404xrs_E_DA10_DT11NANNANT00.45 BA10
414xrs_E_DT11_DA12NANNANT01.13 OP24
424xrs_E_DA12_DA13NANNANT00.50 BB13
434xrs_E_DA13_DT14NANNANT00.46 AA06
444xrs_E_DT14_DT15AAAAA00140.55 AA00
454xrs_E_DT15_DG16NANNANT00.96 IC03
464xrs_E_DG16_DT17NANNANT01.04 AB02
474xrs_E_DT17_DT18NANNANT00.81 AB05
484xrs_L_DT2_DT3NANNANT00.86 IC04
494xrs_L_DT3_DG4NANNANT00.38 BB03
504xrs_L_DG4_DA5NANNANT00.61 BB03
514xrs_L_DA5_DC6NANNANT00.48 AA04
524xrs_L_DC6_DA7NANNANT00.43 AA01
534xrs_L_DA7_DG8NANNANT00.60 BB13
544xrs_L_DG8_DG9NANNANT00.64 BB02
554xrs_L_DG9_DA10NANNANT00.49 BB03
564xrs_L_DA10_DT11NANNANT00.48 BA10
574xrs_L_DT11_DA12NANNANT00.60 AB02
584xrs_L_DA12_DA13NANNANT00.57 BB13
594xrs_L_DA13_DT14NANNANT00.73 AA05
604xrs_L_DT14_DT15NANNANT00.75 AA09
614xrs_L_DT15_DG16NANNANT00.69 BB02
624xrs_L_DG16_DT17NANNANT01.34 AB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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