Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
homodimer of TALE type homeobox transcription factor MEIS1 complexes with specific DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 32 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4xrm_M_DA1_DG2 | NAN | NANT | 0 | 1.32 |
| 02 | 4xrm_M_DG2_DC3 | NAN | NANT | 0 | 0.67 |
| 03 | 4xrm_M_DC3_DT4 | BBB | BB00 | 25 | 0.40 |
| 04 | 4xrm_M_DT4_DG5 | B12 | BB04 | 79 | 0.23 |
| 05 | 4xrm_M_DG5_DA6 | BBB | BB01 | 93 | 0.14 |
| 06 | 4xrm_M_DA6_DC7 | BBB | BB00 | 42 | 0.30 |
| 07 | 4xrm_M_DC7_DA8 | BB2 | BB07 | 74 | 0.32 |
| 08 | 4xrm_M_DA8_DG9 | BBB | BB01 | 75 | 0.22 |
| 09 | 4xrm_M_DG9_DC10 | BBB | BB00 | 65 | 0.33 |
| 10 | 4xrm_M_DC10_DT11 | BBB | BB00 | 80 | 0.21 |
| 11 | 4xrm_M_DT11_DG12 | BBB | BB00 | 87 | 0.15 |
| 12 | 4xrm_M_DG12_DT13 | B-A | BA05 | 76 | 0.24 |
| 13 | 4xrm_M_DT13_DC14 | A-B | AB03 | 92 | 0.28 |
| 14 | 4xrm_M_DC14_DA15 | BB2 | BB07 | 57 | 0.28 |
| 15 | 4xrm_M_DA15_DA16 | BBB | BB00 | 75 | 0.21 |
| 16 | 4xrm_M_DA16_DG17 | miB | BB10 | 34 | 0.35 |
| 17 | 4xrm_L_DT21_DC22 | NAN | NANT | 0 | 0.60 |
| 18 | 4xrm_L_DC22_DT23 | BBB | BB00 | 54 | 0.36 |
| 19 | 4xrm_L_DT23_DT24 | BBB | BB00 | 68 | 0.24 |
| 20 | 4xrm_L_DT24_DG25 | BB2 | BB07 | 79 | 0.16 |
| 21 | 4xrm_L_DG25_DA26 | BBB | BB01 | 86 | 0.16 |
| 22 | 4xrm_L_DA26_DC27 | BBB | BB00 | 31 | 0.30 |
| 23 | 4xrm_L_DC27_DA28 | BB2 | BB07 | 75 | 0.31 |
| 24 | 4xrm_L_DA28_DG29 | BBB | BB01 | 73 | 0.23 |
| 25 | 4xrm_L_DG29_DC30 | BBB | BB00 | 75 | 0.31 |
| 26 | 4xrm_L_DC30_DT31 | BBB | BB00 | 82 | 0.21 |
| 27 | 4xrm_L_DT31_DG32 | BBB | BB01 | 85 | 0.16 |
| 28 | 4xrm_L_DG32_DT33 | B-A | BA05 | 82 | 0.21 |
| 29 | 4xrm_L_DT33_DC34 | A-B | AB03 | 90 | 0.29 |
| 30 | 4xrm_L_DC34_DA35 | BBB | BB00 | 51 | 0.32 |
| 31 | 4xrm_L_DA35_DG36 | B12 | BB04 | 86 | 0.19 |
| 32 | 4xrm_L_DG36_DC37 | miB | BB12 | 56 | 0.37 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|