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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of the A.fulgidus CCA-adding enzyme in complex with a human MenBeta minihelix ending in CCACC and AMPcPP

Results of the assignment of 55 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
014x4v_B_G1_G2AAAAA00950.10 AA00
024x4v_B_G2_C3AAAAA00880.13 AA00
034x4v_B_C3_G.A4NANNANT00.53 IC03
044x4v_B_C3_G.B4AAwAA11880.23 AA11
054x4v_B_G.A4_C5AAAAA09780.30 AA09
064x4v_B_G.B4_C5NANNANT00.70 AA07
074x4v_B_C5_U6AAAAA08290.28 AA08
084x4v_B_U6_G7AAAAA00910.13 AA00
094x4v_B_G7_C8AAAAA00840.19 AA00
104x4v_B_C8_G9AAAAA00790.23 AA00
114x4v_B_G9_G10AAAAA00730.22 AA00
124x4v_B_G10_G11AAAAA00800.21 AA00
134x4v_B_G11_G12AAAAA00860.18 AA00
144x4v_B_G12_U13AAAAA00880.23 AA00
154x4v_B_U13_U14AAAAA00630.38 AA00
164x4v_B_U14_C15OPNOP04850.18 OP04
174x4v_B_C15_G16AAAAA00630.38 AA00
184x4v_B_G16_A17ICLIC01920.26 IC01
194x4v_B_A17_G18OPNOP25230.19 OP25
204x4v_B_G18_U19A-BAB05940.23 AB05
214x4v_B_U19_C20OPNOP12850.15 OP12
224x4v_B_C20_C21AAAAA00900.15 AA00
234x4v_B_C21_C22AAAAA00890.15 AA00
244x4v_B_C22_C23AAAAA00880.16 AA00
254x4v_B_C23_G24AAAAA00860.15 AA00
264x4v_B_G24_C25AAAAA00950.15 AA00
274x4v_B_C25_A26AAAAA00840.16 AA00
284x4v_B_A26_G27AAAAA00850.22 AA00
294x4v_B_G32_C33AAAAA00800.10 AA00
304x4v_B_C33_C34AAAAA00970.16 AA00
314x4v_B_C34_A35AAAAA00690.17 AA00
324x4v_B_A35_C36AAAAA00610.31 AA00
334x4v_B_C36_C37NANNANT00.81 IC02
344x4v_D_G1_G2AAAAA00930.10 AA00
354x4v_D_G2_C3AAAAA00930.11 AA00
364x4v_D_C3_G4AAAAA00920.13 AA00
374x4v_D_G4_C5AAAAA00950.12 AA00
384x4v_D_C5_U6NANNANT00.54 AA06
394x4v_D_G10_G11AAAAA00700.17 AA00
404x4v_D_G11_G12AAAAA00870.17 AA00
414x4v_D_G12_U13AAAAA00830.24 AA00
424x4v_D_U13_U14AAAAA08700.23 AA08
434x4v_D_U14_C15OPNOP04820.25 OP04
444x4v_D_C15_G16AAwAA01290.35 AA01
454x4v_D_G16_A17NANNANT00.54 IC01
464x4v_D_C20_C21NANNANT00.79 AB02
474x4v_D_C21_C22AAAAA00890.15 AA00
484x4v_D_C22_C23AAAAA00920.18 AA00
494x4v_D_C23_G24AAAAA00780.18 AA00
504x4v_D_G24_C25AAAAA00750.21 AA00
514x4v_D_G32_C33AAAAA00790.15 AA00
524x4v_D_C33_C34AAAAA00930.16 AA00
534x4v_D_C34_A35AAAAA00690.18 AA00
544x4v_D_A35_C36AAAAA00640.31 AA00
554x4v_D_C36_C37NANNANT00.59 OP12

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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