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Conformers: ABBIImiBZICOPNSYNN
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RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 14.4 MGy

Results of the assignment of 68 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
014x4e_E_DA1_DT2A-BAB04350.38 AB04
024x4e_E_DT2_DG3BBBBB00470.25 BB00
034x4e_E_DG3_DT4B-ABA10190.34 BA10
044x4e_E_DT4_DG5NANNANT00.50 BB16
054x4e_E_DG5_DA6NANNANT00.24 AB03
064x4e_E_DA6_DC7miBBB10450.28 BB10
074x4e_E_DC7_DT8NANNANT00.55 BB03
084x4e_E_DT8_DT9BBwBB16150.49 BB16
094x4e_E_DT9_DA10NANNANT01.01 OP24
104x4e_E_DA10_DT11A-BAB03830.28 AB03
114x4e_E_DT11_DA12BB2BB07880.22 BB07
124x4e_E_DA12_DG13BBBBB00720.20 BB00
134x4e_E_DG13_DT14BBBBB00540.44 BB00
144x4e_E_DT14_DC15BBBBB00650.26 BB00
154x4e_E_DC15_DC16BBBBB00870.24 BB00
164x4e_E_DC16_DG17B-ABA05110.34 BA05
174x4e_E_DG17_DT18NANNANT00.46 AB03
184x4e_E_DT18_DG19BBBBB00460.27 BB00
194x4e_E_DG19_DT20NANNANT00.58 BB10
204x4e_E_DT20_DG21NANNANT00.43 BB11
214x4e_E_DG21_DA22BBwBB02170.43 BB02
224x4e_E_DA22_DT23B-ABA05200.37 BA05
234x4e_E_DT23_DT24NANNANT00.36 BB17
244x4e_E_DT24_DA25BBBBB00710.22 BB00
254x4e_E_DA25_DT26BBBBB00510.21 BB00
264x4e_E_DT26_DA27B12BB04680.25 BB04
274x4e_E_DA27_DG28BBBBB00760.22 BB00
284x4e_E_DG28_DT29B-ABA01110.44 BA01
294x4e_E_DT29_DC30miBBB14270.41 BB14
304x4e_E_DC30_DA31B-ABA10120.55 BA10
314x4e_E_DA31_DA32A-BAB04500.33 AB04
324x4e_E_DA32_DC33BBBBB00870.21 BB00
334x4e_E_DC33_DA34NANNANT00.39 BB15
344x4e_E_DA34_DT35NANNANT00.35 AA02
354x4e_F_DA1_DT2A-BAB04480.33 AB04
364x4e_F_DT2_DG3BBBBB00510.31 BB00
374x4e_F_DG3_DT4BBBBB00600.30 BB00
384x4e_F_DT4_DT5miBBB10440.36 BB10
394x4e_F_DT5_DG6NANNANT00.71 AB02
404x4e_F_DG6_DA7NANNANT00.51 BA10
414x4e_F_DA7_DC8NANNANT00.33 AB03
424x4e_F_DC8_DT9BBBBB00640.26 BB00
434x4e_F_DT9_DA10NANNANT01.03 OP24
444x4e_F_DA10_DT11A-BAB03550.31 AB03
454x4e_F_DT11_DA12BB2BB07830.21 BB07
464x4e_F_DA12_DA13BBBBB00770.23 BB00
474x4e_F_DA13_DT14BBBBB00400.43 BB00
484x4e_F_DT14_DC15BBBBB00410.28 BB00
494x4e_F_DC15_DA16BBBBB00890.18 BB00
504x4e_F_DA16_DC17B-ABA01430.38 BA01
514x4e_F_DC17_DA18A-BAB03820.29 AB03
524x4e_F_DA18_DC19BBBBB01340.30 BB01
534x4e_F_DC19_DG20B-ABA01240.35 BA01
544x4e_F_DG20_DG21NANNANT00.42 BB14
554x4e_F_DG21_DA22NANNANT00.34 BB15
564x4e_F_DA22_DC23B-ABA08570.44 BA08
574x4e_F_DC23_DT24NANNANT00.77 BB16
584x4e_F_DT24_DA25BBBBB00660.24 BB00
594x4e_F_DA25_DT26BBBBB00630.18 BB00
604x4e_F_DT26_DA27BB2BB07910.21 BB07
614x4e_F_DA27_DA28BBBBB00850.19 BB00
624x4e_F_DA28_DG29B-ABA05210.27 BA05
634x4e_F_DG29_DT30A-BAB03370.57 AB03
644x4e_F_DT30_DC31NANNANT00.51 BA10
654x4e_F_DC31_DA32NANNANT00.73 AA06
664x4e_F_DA32_DC33A-BAB01170.41 AB01
674x4e_F_DC33_DA34B-ABA13720.24 BA13
684x4e_F_DA34_DT35AAAAA08370.40 AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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