Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of the Mot1 N-terminal domain in complex with TBP and NC2 bound to a promoter DNA fragment
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 37 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4wzs_E_DC2_DC3 | B12 | BB04 | 29 | 0.30 |
| 02 | 4wzs_E_DC3_DA4 | B12 | BB04 | 53 | 0.22 |
| 03 | 4wzs_E_DA4_DC5 | BBB | BB01 | 66 | 0.24 |
| 04 | 4wzs_E_DC5_DC6 | NAN | NANT | 0 | 0.55 |
| 05 | 4wzs_E_DC6_DC7 | NAN | NANT | 0 | 0.58 |
| 06 | 4wzs_E_DC7_DC8 | BBB | BB01 | 43 | 0.24 |
| 07 | 4wzs_E_DC8_DC9 | NAN | NANT | 0 | 0.51 |
| 08 | 4wzs_E_DC9_DT10 | NAN | NANT | 0 | 0.58 |
| 09 | 4wzs_E_DT10_DT11 | AAA | AA02 | 34 | 0.56 |
| 10 | 4wzs_E_DT11_DT12 | AAA | AA00 | 29 | 0.44 |
| 11 | 4wzs_E_DT12_DT13 | AAA | AA02 | 76 | 0.35 |
| 12 | 4wzs_E_DT13_DA14 | AAA | AA02 | 41 | 0.36 |
| 13 | 4wzs_E_DA14_DT15 | AAA | AA02 | 56 | 0.36 |
| 14 | 4wzs_E_DT15_DA16 | A-B | AB04 | 45 | 0.39 |
| 15 | 4wzs_E_DA16_DG17 | B12 | BB05 | 17 | 0.61 |
| 16 | 4wzs_E_DG17_DC18 | BBB | BB01 | 40 | 0.40 |
| 17 | 4wzs_E_DC18_DC19 | B-A | BA05 | 74 | 0.22 |
| 18 | 4wzs_E_DC19_DC20 | NAN | NANT | 0 | 0.56 |
| 19 | 4wzs_E_DC20_DT21 | NAN | NANT | 0 | 0.52 |
| 20 | 4wzs_F_DG5_DG6 | miB | BB13 | 43 | 0.39 |
| 21 | 4wzs_F_DG6_DG7 | NAN | NANT | 0 | 0.71 |
| 22 | 4wzs_F_DG7_DC8 | NAN | NANT | 0 | 0.61 |
| 23 | 4wzs_F_DC8_DT9 | AAA | AA09 | 82 | 0.19 |
| 24 | 4wzs_F_DT9_DA10 | AAA | AA00 | 13 | 0.44 |
| 25 | 4wzs_F_DA10_DT11 | AAA | AA00 | 23 | 0.38 |
| 26 | 4wzs_F_DT11_DA12 | AAA | AA02 | 51 | 0.21 |
| 27 | 4wzs_F_DA12_DA13 | AAA | AA02 | 68 | 0.24 |
| 28 | 4wzs_F_DA13_DA14 | AAA | AA02 | 40 | 0.30 |
| 29 | 4wzs_F_DA14_DA15 | AAA | AA02 | 69 | 0.35 |
| 30 | 4wzs_F_DA15_DG16 | A-B | AB01 | 26 | 0.41 |
| 31 | 4wzs_F_DG16_DG17 | B-A | BA08 | 79 | 0.34 |
| 32 | 4wzs_F_DG17_DG18 | BBB | BB01 | 35 | 0.30 |
| 33 | 4wzs_F_DG18_DG19 | B-A | BA10 | 68 | 0.40 |
| 34 | 4wzs_F_DG19_DG20 | NAN | NANT | 0 | 0.40 |
| 35 | 4wzs_F_DG20_DT21 | BBw | BB03 | 33 | 0.32 |
| 36 | 4wzs_F_DT21_DG22 | BBB | BB01 | 18 | 0.30 |
| 37 | 4wzs_F_DG22_DG23 | BBw | BB16 | 27 | 0.65 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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