Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of lambda exonuclease in complex with DNA and Ca2+
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4wuz_D_DT1_DC2 | miB | BB10 | 17 | 0.41 |
| 02 | 4wuz_D_DC2_DG3 | BBB | BB00 | 73 | 0.30 |
| 03 | 4wuz_D_DG3_DG4 | B-A | BA09 | 53 | 0.28 |
| 04 | 4wuz_D_DG4_DT5 | A-B | AB05 | 85 | 0.24 |
| 05 | 4wuz_D_DT5_DA6 | BBB | BB00 | 62 | 0.21 |
| 06 | 4wuz_D_DA6_DC7 | B12 | BB04 | 52 | 0.35 |
| 07 | 4wuz_D_DC7_DA8 | BB2 | BB07 | 74 | 0.22 |
| 08 | 4wuz_D_DA8_DG9 | B-A | BA05 | 53 | 0.18 |
| 09 | 4wuz_D_DG9_DT10 | A-B | AB01 | 41 | 0.44 |
| 10 | 4wuz_D_DT10_DA11 | B12 | BB04 | 64 | 0.20 |
| 11 | 4wuz_D_DA11_DG12 | BBB | BB00 | 63 | 0.20 |
| 12 | 4wuz_E_DA1_DG2 | NAN | NANT | 0 | 0.58 |
| 13 | 4wuz_E_DG2_DC3 | NAN | NANT | 0 | 0.87 |
| 14 | 4wuz_E_DC3_DT4 | miB | BB12 | 67 | 0.41 |
| 15 | 4wuz_E_DT4_DA5 | BBw | BB16 | 63 | 0.27 |
| 16 | 4wuz_E_DA5_DC6 | NAN | NANT | 0 | 0.59 |
| 17 | 4wuz_E_DC6_DT7 | A-B | AB03 | 29 | 0.43 |
| 18 | 4wuz_E_DT7_DG8 | B-A | BA17 | 28 | 0.52 |
| 19 | 4wuz_E_DG8_DT9 | A-B | AB03 | 38 | 0.45 |
| 20 | 4wuz_E_DT9_DA10 | BBB | BB00 | 93 | 0.18 |
| 21 | 4wuz_E_DA10_DC11 | BBB | BB00 | 46 | 0.21 |
| 22 | 4wuz_E_DC11_DC12 | BBB | BB00 | 17 | 0.30 |
| 23 | 4wuz_E_DC12_DG13 | BBB | BB00 | 11 | 0.33 |
| 24 | 4wuz_E_DG13_DA14 | BBB | BB00 | 14 | 0.40 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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