Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of E. faecalis DNA binding domain LiaRD191N complexed with 26bp DNA

Results of the assignment of 49 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
014wul_H_DA-124_DC-123BBBBB01550.17 BB01
024wul_H_DC-123_DT-122B-ABA05590.27 BA05
034wul_H_DT-122_DA-121AAAAA02360.56 AA02
044wul_H_DA-121_DG-120B-ABA05190.35 BA05
054wul_H_DG-120_DT-119A-BAB01390.26 AB01
064wul_H_DT-119_DC-118BBBBB01780.18 BB01
074wul_H_DC-118_DC-117BBBBB01170.24 BB01
084wul_H_DC-117_DT-116B-ABA05450.29 BA05
094wul_H_DT-116_DT-115BBBBB01370.34 BB01
104wul_H_DT-115_DA-114BBBBB00810.18 BB00
114wul_H_DA-114_DC-113BBBBB01530.27 BB01
124wul_H_DC-113_DT-112BBBBB01470.26 BB01
134wul_H_DT-112_DA-111BBBBB00280.29 BB00
144wul_H_DA-111_DA-110BBBBB00390.30 BB00
154wul_H_DA-110_DT-109B-ABA10450.30 BA10
164wul_H_DT-109_DG-108NANNANT00.41 AB04
174wul_H_DG-108_DA-107A-BAB03790.27 AB03
184wul_H_DA-107_DG-106B12BB04620.21 BB04
194wul_H_DG-106_DA-105BBBBB00850.17 BB00
204wul_H_DA-105_DA-104B12BB04210.29 BB04
214wul_H_DA-104_DG-103B-ABA08650.24 BA08
224wul_H_DG-103_DA-102NANNANT00.64 AA01
234wul_H_DA-102_DA-101NANNANT00.66 BB03
244wul_H_DA-100_DT-99B12BB04650.39 BB04
254wul_C_DG-123_DT-124NANNANT00.91 BB1S
264wul_C_DA-122_DG-123B12BB04500.27 BB04
274wul_C_DT-121_DA-122BBBBB01670.22 BB01
284wul_C_DC-120_DT-121A-BAB0390.54 AB03
294wul_C_DA-119_DC-120B-ABA09570.29 BA09
304wul_C_DG-118_DA-119BBBBB00740.17 BB00
314wul_C_DG-117_DG-118A-BAB03610.42 AB03
324wul_C_DA-116_DG-117B-ABA01260.22 BA01
334wul_C_DA-115_DA-116BBBBB00830.20 BB00
344wul_C_DT-114_DA-115BBBBB00800.21 BB00
354wul_C_DG-113_DT-114BBBBB01530.21 BB01
364wul_C_DA-112_DG-113NANNANT00.56 BA05
374wul_C_DT-111_DA-112B-ABA01140.24 BA01
384wul_C_DT-110_DT-111BBBBB00390.26 BB00
394wul_C_DA-109_DT-110A-BAB01570.28 AB01
404wul_C_DC-108_DA-109NANNANT00.31 BA05
414wul_C_DT-107_DC-108NANNANT00.49 AA02
424wul_C_DC-106_DT-107B-ABA05580.26 BA05
434wul_C_DT-105_DC-106BBBBB01560.22 BB01
444wul_C_DT-104_DT-105B-ABA05510.31 BA05
454wul_C_DC-103_DT-104BBBBB01760.14 BB01
464wul_C_DT-102_DC-103BBBBB01870.12 BB01
474wul_C_DT-101_DT-102BBBBB00520.48 BB00
484wul_C_DT-100_DT-101NANNANT00.66 AB02
494wul_C_DA-99_DT-100NANNANT00.95 OP24

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N