Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of E. faecalis DNA binding domain LiaRD191N complexed with 22bp DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 31 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4wu4_G_DT-101_DT-102 | A-B | AB01 | 54 | 0.40 |
| 02 | 4wu4_G_DT-100_DT-101 | B-A | BA05 | 67 | 0.18 |
| 03 | 4wu4_G_DA-99_DT-100 | A-B | AB05 | 21 | 0.29 |
| 04 | 4wu4_G_DG-98_DA-99 | AAA | AA08 | 86 | 0.30 |
| 05 | 4wu4_G_DC-97_DG-98 | AAA | AA04 | 43 | 0.66 |
| 06 | 4wu4_G_DA-96_DC-97 | NAN | NANT | 0 | 0.87 |
| 07 | 4wu4_G_DA-95_DA-96 | BBB | BB00 | 23 | 0.23 |
| 08 | 4wu4_G_DG-94_DA-95 | BBB | BB00 | 18 | 0.32 |
| 09 | 4wu4_G_DA-93_DG-94 | B-A | BA05 | 70 | 0.21 |
| 10 | 4wu4_G_DA-92_DA-93 | B12 | BB04 | 23 | 0.17 |
| 11 | 4wu4_G_DT-91_DA-92 | B12 | BB04 | 48 | 0.23 |
| 12 | 4wu4_G_DT-90_DT-91 | BBB | BB01 | 78 | 0.20 |
| 13 | 4wu4_G_DC-89_DT-90 | A-B | AB01 | 60 | 0.26 |
| 14 | 4wu4_G_DA-88_DC-89 | B-A | BA01 | 49 | 0.18 |
| 15 | 4wu4_G_DG-87_DA-88 | BBB | BB00 | 91 | 0.21 |
| 16 | 4wu4_G_DG-86_DG-87 | BBB | BB00 | 78 | 0.18 |
| 17 | 4wu4_H_DA-102_DA-101 | A-B | AB04 | 41 | 0.39 |
| 18 | 4wu4_H_DA-101_DA-100 | BBw | BB02 | 12 | 0.45 |
| 19 | 4wu4_H_DA-100_DT-99 | B-A | BA05 | 49 | 0.34 |
| 20 | 4wu4_H_DT-99_DC-98 | A-B | AB01 | 65 | 0.32 |
| 21 | 4wu4_H_DC-98_DG-97 | NAN | NANT | 0 | 0.47 |
| 22 | 4wu4_H_DT-96_DT-95 | BBB | BB01 | 53 | 0.19 |
| 23 | 4wu4_H_DT-95_DC-94 | BBB | BB00 | 45 | 0.19 |
| 24 | 4wu4_H_DC-94_DT-93 | B12 | BB04 | 58 | 0.18 |
| 25 | 4wu4_H_DT-93_DT-92 | BBB | BB00 | 85 | 0.18 |
| 26 | 4wu4_H_DT-92_DA-91 | B12 | BB04 | 83 | 0.19 |
| 27 | 4wu4_H_DA-91_DA-90 | BBB | BB00 | 76 | 0.16 |
| 28 | 4wu4_H_DA-90_DG-89 | B-A | BA05 | 69 | 0.19 |
| 29 | 4wu4_H_DG-89_DT-88 | BBB | BB01 | 65 | 0.28 |
| 30 | 4wu4_H_DT-88_DC-87 | BBB | BB01 | 70 | 0.20 |
| 31 | 4wu4_H_DC-87_DC-86 | BBB | BB00 | 56 | 0.29 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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