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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of the asparagine transamidosome from Pseudomonas aeruginosa

Results of the assignment of 300 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0014wj3_Q_U1_C2AAAAA08890.13 AA08
0024wj3_Q_C2_C3AAAAA00480.31 AA00
0034wj3_Q_C3_G4AAAAA00930.10 AA00
0044wj3_Q_G4_C5AAAAA00870.12 AA00
0054wj3_Q_C5_G6AAAAA00820.13 AA00
0064wj3_Q_G6_A7A-BAB05590.44 AB05
0074wj3_Q_A7_U8OPNOP11800.46 OP11
0084wj3_Q_U8_A9NANNANT01.30 IC04
0094wj3_Q_A9_G10NANNANT01.73 OP04
0104wj3_Q_G10_C11AAAAA08830.17 AA08
0114wj3_Q_C11_U12AAAAA00830.19 AA00
0124wj3_Q_U12_C13AAAAA00680.29 AA00
0134wj3_Q_C13_A14AAuAA12530.21 AA12
0144wj3_Q_A14_G15AAAAA00190.38 AA00
0154wj3_Q_G15_U16NANNANT00.72 OP28
0164wj3_Q_U16_C17NANNANT00.84 OP04
0174wj3_Q_C17_G18NANNANT00.72 OP06
0184wj3_Q_G18_G19NANNANT00.48 IC04
0194wj3_Q_G19_U20NANNANT01.48 OP30
0204wj3_Q_U20_A21NANNANT01.35 AA13
0214wj3_Q_A21_G22OPNOP07310.37 OP07
0224wj3_Q_G22_A23AAAAA00860.15 AA00
0234wj3_Q_A23_G24AAAAA00820.20 AA00
0244wj3_Q_G24_C25AAAAA08820.23 AA08
0254wj3_Q_C25_A26AAAAA00730.27 AA00
0264wj3_Q_A26_A27AAAAA00770.22 AA00
0274wj3_Q_A27_A28AAAAA00760.19 AA00
0284wj3_Q_A28_U29AAAAA00910.12 AA00
0294wj3_Q_U29_G30AAAAA00900.14 AA00
0304wj3_Q_G30_A31AAAAA00930.14 AA00
0314wj3_Q_A31_C32AAAAA08910.21 AA08
0324wj3_Q_C32_U33NANNANT00.86 OP29
0334wj3_Q_U33_G34NANNANT00.80 OP22
0344wj3_Q_G34_U35NANNANT01.22 ZZ02
0354wj3_Q_U35_U36AAAAA08270.54 AA08
0364wj3_Q_U36_A37NANNANT00.65 OP21
0374wj3_Q_A37_A38OPNOP17590.44 OP17
0384wj3_Q_A38_U39AAAAA00740.26 AA00
0394wj3_Q_U39_C40AAAAA00940.14 AA00
0404wj3_Q_C40_A41AAAAA00900.10 AA00
0414wj3_Q_A41_U42AAAAA00800.17 AA00
0424wj3_Q_U42_U43AAAAA00950.14 AA00
0434wj3_Q_U43_G44AAAAA00980.12 AA00
0444wj3_Q_G44_G45AAAAA08570.28 AA08
0454wj3_Q_G45_G46NANNANT00.61 AA03
0464wj3_Q_G46_U47NANNANT01.27 OP17
0474wj3_Q_U47_C48NANNANT01.64 OP01
0484wj3_Q_C48_C49NANNANT01.45 OP05
0494wj3_Q_C49_C50AAAAA00330.34 AA00
0504wj3_Q_C50_U51AAAAA00970.13 AA00
0514wj3_Q_U51_G52AAAAA00800.16 AA00
0524wj3_Q_G52_G53AAAAA00700.20 AA00
0534wj3_Q_G53_U54AAAAA00650.30 AA00
0544wj3_Q_U54_U55AAAAA00550.35 AA00
0554wj3_Q_U55_C56OPNOP04890.19 OP04
0564wj3_Q_C56_G57AAAAA00820.26 AA00
0574wj3_Q_G57_A58NANNANT00.88 IC06
0584wj3_Q_A58_G59NANNANT00.53 OP04
0594wj3_Q_G59_U60A-BAB05850.34 AB05
0604wj3_Q_U60_C61OPNOP12890.10 OP12
0614wj3_Q_C61_C62AAAAA00690.25 AA00
0624wj3_Q_C62_A63AAAAA00840.15 AA00
0634wj3_Q_A63_G64AAAAA00940.09 AA00
0644wj3_Q_G64_G65AAwAA01780.21 AA01
0654wj3_Q_G65_U66AAAAA08250.31 AA08
0664wj3_Q_U66_C67AAAAA00910.14 AA00
0674wj3_Q_C67_G68AAAAA00720.24 AA00
0684wj3_Q_G68_C69AAAAA00640.25 AA00
0694wj3_Q_C69_G70AAAAA00770.17 AA00
0704wj3_Q_G70_G71AAAAA00910.10 AA00
0714wj3_Q_G71_A72AAAAA00890.16 AA00
0724wj3_Q_A72_G73AAAAA00790.24 AA00
0734wj3_Q_G73_C74AAAAA00780.18 AA00
0744wj3_Q_C74_C75AAAAA00600.34 AA00
0754wj3_Q_C75_A76NANNANT01.52 OP05
0764wj3_R_U1_C2AAAAA08900.14 AA08
0774wj3_R_C2_C3AAAAA00330.36 AA00
0784wj3_R_C3_G4AAAAA00940.10 AA00
0794wj3_R_G4_C5AAAAA00890.10 AA00
0804wj3_R_C5_G6AAAAA00840.13 AA00
0814wj3_R_G6_A7A-BAB05600.43 AB05
0824wj3_R_A7_U8OPNOP11780.47 OP11
0834wj3_R_U8_A9NANNANT01.28 IC04
0844wj3_R_A9_G10NANNANT01.72 OP04
0854wj3_R_G10_C11AAAAA08760.20 AA08
0864wj3_R_C11_U12AAAAA00840.18 AA00
0874wj3_R_U12_C13AAAAA00630.31 AA00
0884wj3_R_C13_A14AAuAA12530.20 AA12
0894wj3_R_A14_G15AAAAA00190.39 AA00
0904wj3_R_G15_U16NANNANT00.65 OP28
0914wj3_R_U16_C17NANNANT00.80 OP04
0924wj3_R_C17_G18NANNANT00.74 OP06
0934wj3_R_G18_G19NANNANT00.44 IC04
0944wj3_R_G19_U20NANNANT01.52 IC07
0954wj3_R_U20_A21NANNANT01.23 AA13
0964wj3_R_A21_G22OPNOP07350.33 OP07
0974wj3_R_G22_A23AAAAA00850.15 AA00
0984wj3_R_A23_G24AAAAA00890.16 AA00
0994wj3_R_G24_C25AAAAA08830.19 AA08
1004wj3_R_C25_A26AAAAA00750.26 AA00
1014wj3_R_A26_A27AAAAA00780.20 AA00
1024wj3_R_A27_A28AAAAA00740.20 AA00
1034wj3_R_A28_U29AAAAA00900.11 AA00
1044wj3_R_U29_G30AAAAA00910.14 AA00
1054wj3_R_G30_A31AAAAA00930.13 AA00
1064wj3_R_A31_C32AAAAA08910.19 AA08
1074wj3_R_C32_U33NANNANT00.82 OP29
1084wj3_R_U33_G34NANNANT00.79 OP22
1094wj3_R_G34_U35NANNANT01.20 ZZ02
1104wj3_R_U35_U36AAAAA08250.55 AA08
1114wj3_R_U36_A37NANNANT00.66 OP21
1124wj3_R_A37_A38OPNOP17570.46 OP17
1134wj3_R_A38_U39AAAAA00690.29 AA00
1144wj3_R_U39_C40AAAAA00940.15 AA00
1154wj3_R_C40_A41AAAAA00890.12 AA00
1164wj3_R_A41_U42AAAAA00820.16 AA00
1174wj3_R_U42_U43AAAAA00930.14 AA00
1184wj3_R_U43_G44AAAAA00970.13 AA00
1194wj3_R_G44_G45AAAAA08550.24 AA08
1204wj3_R_G45_G46AAuAA12160.59 AA12
1214wj3_R_G46_U47NANNANT01.12 OP09
1224wj3_R_U47_C48NANNANT01.16 OP17
1234wj3_R_C48_C49NANNANT01.41 OP05
1244wj3_R_C49_C50AAAAA00430.31 AA00
1254wj3_R_C50_U51AAAAA00970.14 AA00
1264wj3_R_U51_G52AAAAA00780.18 AA00
1274wj3_R_G52_G53AAAAA00680.23 AA00
1284wj3_R_G53_U54AAAAA00720.27 AA00
1294wj3_R_U54_U55AAAAA00720.29 AA00
1304wj3_R_U55_C56OPNOP04860.23 OP04
1314wj3_R_C56_G57AAAAA00780.29 AA00
1324wj3_R_G57_A58NANNANT00.88 IC06
1334wj3_R_A58_G59NANNANT00.54 OP04
1344wj3_R_G59_U60A-BAB05830.36 AB05
1354wj3_R_U60_C61OPNOP12900.09 OP12
1364wj3_R_C61_C62AAAAA00640.26 AA00
1374wj3_R_C62_A63AAAAA00830.17 AA00
1384wj3_R_A63_G64AAAAA00940.09 AA00
1394wj3_R_G64_G65AAwAA01770.23 AA01
1404wj3_R_G65_U66AAAAA08320.28 AA08
1414wj3_R_U66_C67AAAAA00900.14 AA00
1424wj3_R_C67_G68AAAAA00730.25 AA00
1434wj3_R_G68_C69AAAAA00720.23 AA00
1444wj3_R_C69_G70AAAAA00760.18 AA00
1454wj3_R_G70_G71AAAAA00860.15 AA00
1464wj3_R_G71_A72AAAAA00870.17 AA00
1474wj3_R_A72_G73AAAAA00770.25 AA00
1484wj3_R_G73_C74AAAAA00790.18 AA00
1494wj3_R_C74_C75AAAAA00550.35 AA00
1504wj3_R_C75_A76NANNANT01.55 OP05
1514wj3_S_U1_C2AAAAA08890.13 AA08
1524wj3_S_C2_C3AAAAA00480.31 AA00
1534wj3_S_C3_G4AAAAA00930.09 AA00
1544wj3_S_G4_C5AAAAA00840.12 AA00
1554wj3_S_C5_G6AAAAA00820.13 AA00
1564wj3_S_G6_A7A-BAB05600.43 AB05
1574wj3_S_A7_U8OPNOP11800.46 OP11
1584wj3_S_U8_A9NANNANT01.34 IC04
1594wj3_S_A9_G10NANNANT01.26 OP12
1604wj3_S_G10_C11AAAAA08890.15 AA08
1614wj3_S_C11_U12AAAAA00840.21 AA00
1624wj3_S_U12_C13AAAAA00650.30 AA00
1634wj3_S_C13_A14AAuAA12500.23 AA12
1644wj3_S_A14_G15AAAAA00190.38 AA00
1654wj3_S_G15_U16NANNANT00.69 OP28
1664wj3_S_U16_C17NANNANT00.83 OP04
1674wj3_S_C17_G18NANNANT00.71 OP06
1684wj3_S_G18_G19NANNANT00.55 IC04
1694wj3_S_G19_U20NANNANT01.15 OP16
1704wj3_S_U20_A21NANNANT02.41 OP01
1714wj3_S_A21_G22NANNANT01.21 AA11
1724wj3_S_G22_A23AAAAA00820.20 AA00
1734wj3_S_A23_G24AAAAA00880.13 AA00
1744wj3_S_G24_C25AAAAA00650.29 AA00
1754wj3_S_C25_A26AAAAA00780.23 AA00
1764wj3_S_A26_A27AAAAA00750.26 AA00
1774wj3_S_A27_A28AAAAA00790.13 AA00
1784wj3_S_A28_U29AAAAA00910.10 AA00
1794wj3_S_U29_G30AAAAA00920.15 AA00
1804wj3_S_G30_A31AAAAA00950.13 AA00
1814wj3_S_A31_C32AAAAA08910.21 AA08
1824wj3_S_C32_U33NANNANT00.88 OP29
1834wj3_S_U33_G34NANNANT00.79 OP22
1844wj3_S_G34_U35NANNANT01.01 BA17
1854wj3_S_U35_U36AAAAA08270.53 AA08
1864wj3_S_U36_A37NANNANT00.66 OP21
1874wj3_S_A37_A38OPNOP17640.42 OP17
1884wj3_S_A38_U39AAAAA00720.27 AA00
1894wj3_S_U39_C40AAAAA00920.16 AA00
1904wj3_S_C40_A41AAAAA00890.12 AA00
1914wj3_S_A41_U42AAAAA00840.15 AA00
1924wj3_S_U42_U43AAAAA00900.15 AA00
1934wj3_S_U43_G44AAAAA00990.11 AA00
1944wj3_S_G44_G45AAAAA08820.23 AA08
1954wj3_S_G45_G46NANNANT01.12 AA07
1964wj3_S_G46_U47NANNANT01.23 OP17
1974wj3_S_U47_C48NANNANT01.67 OP01
1984wj3_S_C48_C49NANNANT01.32 OP05
1994wj3_S_C49_C50AAAAA00460.30 AA00
2004wj3_S_C50_U51AAAAA00970.14 AA00
2014wj3_S_U51_G52AAAAA00810.16 AA00
2024wj3_S_G52_G53AAAAA00700.20 AA00
2034wj3_S_G53_U54AAAAA00770.27 AA00
2044wj3_S_U54_U55AAAAA00750.29 AA00
2054wj3_S_U55_C56OPNOP04810.24 OP04
2064wj3_S_C56_G57AAAAA00800.27 AA00
2074wj3_S_G57_A58NANNANT00.88 IC06
2084wj3_S_A58_G59NANNANT00.52 OP04
2094wj3_S_G59_U60A-BAB05820.36 AB05
2104wj3_S_U60_C61OPNOP12820.14 OP12
2114wj3_S_C61_C62AAAAA00630.27 AA00
2124wj3_S_C62_A63AAAAA00810.18 AA00
2134wj3_S_A63_G64AAAAA00920.10 AA00
2144wj3_S_G64_G65AAwAA01670.21 AA01
2154wj3_S_G65_U66AAAAA08220.32 AA08
2164wj3_S_U66_C67AAAAA00920.13 AA00
2174wj3_S_C67_G68AAAAA00700.25 AA00
2184wj3_S_G68_C69AAAAA00750.22 AA00
2194wj3_S_C69_G70AAAAA00750.16 AA00
2204wj3_S_G70_G71AAAAA00870.11 AA00
2214wj3_S_G71_A72AAAAA00850.14 AA00
2224wj3_S_A72_G73AAAAA00740.24 AA00
2234wj3_S_G73_C74AAAAA00800.18 AA00
2244wj3_S_C74_C75AAAAA00650.33 AA00
2254wj3_S_C75_A76NANNANT01.51 OP05
2264wj3_T_U1_C2AAAAA08880.15 AA08
2274wj3_T_C2_C3AAAAA00420.33 AA00
2284wj3_T_C3_G4AAAAA00940.09 AA00
2294wj3_T_G4_C5AAAAA00870.10 AA00
2304wj3_T_C5_G6AAAAA00840.12 AA00
2314wj3_T_G6_A7A-BAB05570.45 AB05
2324wj3_T_A7_U8OPNOP11730.52 OP11
2334wj3_T_U8_A9NANNANT01.31 IC04
2344wj3_T_A9_G10NANNANT01.75 OP04
2354wj3_T_G10_C11AAAAA08900.15 AA08
2364wj3_T_C11_U12AAAAA00870.19 AA00
2374wj3_T_U12_C13AAAAA00700.29 AA00
2384wj3_T_C13_A14AAuAA12490.22 AA12
2394wj3_T_A14_G15AAAAA00210.38 AA00
2404wj3_T_G15_U16NANNANT00.67 OP28
2414wj3_T_U16_C17NANNANT00.80 OP04
2424wj3_T_C17_G18NANNANT00.70 OP06
2434wj3_T_G18_G19NANNANT00.52 IC04
2444wj3_T_G19_U20NANNANT01.96 IC07
2454wj3_T_U20_A21NANNANT01.29 AA13
2464wj3_T_A21_G22NANNANT01.05 AA11
2474wj3_T_G22_A23AAAAA00840.16 AA00
2484wj3_T_A23_G24AAAAA00880.14 AA00
2494wj3_T_G24_C25AAAAA00680.27 AA00
2504wj3_T_C25_A26AAAAA00750.28 AA00
2514wj3_T_A26_A27AAAAA00810.19 AA00
2524wj3_T_A27_A28AAAAA00770.15 AA00
2534wj3_T_A28_U29AAAAA00900.12 AA00
2544wj3_T_U29_G30AAAAA00920.14 AA00
2554wj3_T_G30_A31AAAAA00950.12 AA00
2564wj3_T_A31_C32AAAAA08910.19 AA08
2574wj3_T_C32_U33NANNANT00.91 OP29
2584wj3_T_U33_G34NANNANT00.76 OP22
2594wj3_T_G34_U35NANNANT01.00 BA17
2604wj3_T_U35_U36AAAAA08270.53 AA08
2614wj3_T_U36_A37NANNANT00.64 OP21
2624wj3_T_A37_A38OPNOP17600.45 OP17
2634wj3_T_A38_U39AAAAA00690.27 AA00
2644wj3_T_U39_C40AAAAA00920.15 AA00
2654wj3_T_C40_A41AAAAA00890.13 AA00
2664wj3_T_A41_U42AAAAA00860.13 AA00
2674wj3_T_U42_U43AAAAA00900.15 AA00
2684wj3_T_U43_G44AAAAA00970.12 AA00
2694wj3_T_G44_G45AAAAA08810.24 AA08
2704wj3_T_G45_G46NANNANT01.10 AA07
2714wj3_T_G46_U47NANNANT01.17 OP03
2724wj3_T_U47_C48NANNANT01.07 OP11
2734wj3_T_C48_C49NANNANT01.28 OP05
2744wj3_T_C49_C50AAAAA00460.31 AA00
2754wj3_T_C50_U51AAAAA00980.12 AA00
2764wj3_T_U51_G52AAAAA00790.18 AA00
2774wj3_T_G52_G53AAAAA00700.20 AA00
2784wj3_T_G53_U54AAAAA00760.26 AA00
2794wj3_T_U54_U55AAAAA00670.31 AA00
2804wj3_T_U55_C56OPNOP04820.24 OP04
2814wj3_T_C56_G57AAAAA00810.26 AA00
2824wj3_T_G57_A58NANNANT00.87 IC06
2834wj3_T_A58_G59NANNANT00.53 OP04
2844wj3_T_G59_U60A-BAB05810.38 AB05
2854wj3_T_U60_C61OPNOP12800.15 OP12
2864wj3_T_C61_C62AAAAA00530.30 AA00
2874wj3_T_C62_A63AAAAA00820.18 AA00
2884wj3_T_A63_G64AAAAA00920.10 AA00
2894wj3_T_G64_G65AAwAA01700.23 AA01
2904wj3_T_G65_U66AAAAA08240.31 AA08
2914wj3_T_U66_C67AAAAA00920.13 AA00
2924wj3_T_C67_G68AAAAA00690.26 AA00
2934wj3_T_G68_C69AAAAA00750.22 AA00
2944wj3_T_C69_G70AAAAA00760.17 AA00
2954wj3_T_G70_G71AAAAA00870.10 AA00
2964wj3_T_G71_A72AAAAA00850.15 AA00
2974wj3_T_A72_G73AAAAA00670.26 AA00
2984wj3_T_G73_C74AAAAA00800.19 AA00
2994wj3_T_C74_C75AAAAA00620.35 AA00
3004wj3_T_C75_A76NANNANT01.53 OP05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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