Conformers:
ABBIImiBZICOPNSYNN
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Structure of DNA complex of PCG2
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4ux5_C_DC1_DA2 | A-B | AB05 | 37 | 0.23 |
| 02 | 4ux5_C_DA2_DA3 | B-A | BA01 | 54 | 0.26 |
| 03 | 4ux5_C_DA3_DT4 | A-B | AB02 | 63 | 0.36 |
| 04 | 4ux5_C_DT4_DG5 | BB2 | BB07 | 51 | 0.25 |
| 05 | 4ux5_C_DG5_DA6 | BBB | BB00 | 93 | 0.17 |
| 06 | 4ux5_C_DA6_DC7 | BBB | BB01 | 74 | 0.25 |
| 07 | 4ux5_C_DC7_DG8 | BBB | BB00 | 21 | 0.56 |
| 08 | 4ux5_C_DG8_DC9 | B-A | BA17 | 84 | 0.38 |
| 09 | 4ux5_C_DC9_DG10 | A-B | AB05 | 63 | 0.32 |
| 10 | 4ux5_C_DG10_DT11 | B-A | BA10 | 58 | 0.38 |
| 11 | 4ux5_C_DT11_DA12 | BBB | BB01 | 23 | 0.28 |
| 12 | 4ux5_C_DA12_DA13 | BBB | BB00 | 79 | 0.15 |
| 13 | 4ux5_C_DA13_DG14 | BBB | BB00 | 83 | 0.25 |
| 14 | 4ux5_D_DC1_DT2 | AAA | AA00 | 66 | 0.33 |
| 15 | 4ux5_D_DT2_DT3 | NAN | NANT | 0 | 0.45 |
| 16 | 4ux5_D_DT3_DA4 | A-B | AB02 | 48 | 0.35 |
| 17 | 4ux5_D_DA4_DC5 | BBB | BB01 | 17 | 0.27 |
| 18 | 4ux5_D_DC5_DG6 | A-B | AB03 | 81 | 0.31 |
| 19 | 4ux5_D_DG6_DC7 | B-A | BA08 | 56 | 0.28 |
| 20 | 4ux5_D_DC7_DG8 | A-B | AB03 | 80 | 0.31 |
| 21 | 4ux5_D_DG8_DT9 | B-A | BA13 | 28 | 0.35 |
| 22 | 4ux5_D_DT9_DC10 | A-B | AB02 | 40 | 0.48 |
| 23 | 4ux5_D_DC10_DA11 | BBB | BB00 | 36 | 0.24 |
| 24 | 4ux5_D_DA11_DT12 | BBB | BB01 | 71 | 0.20 |
| 25 | 4ux5_D_DT12_DT13 | B-A | BA05 | 52 | 0.34 |
| 26 | 4ux5_D_DT13_DG14 | NAN | NANT | 0 | 0.53 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| B | ||||
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