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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of Cas9 bound to PAM-containing DNA target

Results of the assignment of 117 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0014un3_A_A1_U2NANNANT00.60 AA06
0024un3_A_U2_A3AAAAA08620.25 AA08
0034un3_A_A3_A4AAAAA08710.38 AA08
0044un3_A_A4_C5AAAAA00920.14 AA00
0054un3_A_C5_U6AAAAA03960.17 AA03
0064un3_A_U6_C7AAAAA08840.17 AA08
0074un3_A_C7_A8AAAAA00530.17 AA00
0084un3_A_A8_A9NANNANT00.50 AB02
0094un3_A_A9_U10AAAAA00590.26 AA00
0104un3_A_U10_U11AAAAA00840.16 AA00
0114un3_A_U11_U12AAAAA00890.13 AA00
0124un3_A_U12_G13AAAAA00900.16 AA00
0134un3_A_G13_U14AAAAA00770.22 AA00
0144un3_A_U14_A15AAAAA00800.19 AA00
0154un3_A_A15_A16AAAAA00800.14 AA00
0164un3_A_A16_A17AAwAA01670.20 AA01
0174un3_A_A17_A18AAAAA08690.29 AA08
0184un3_A_A18_A19AAAAA00770.11 AA00
0194un3_A_A19_A20AAwAA10780.14 AA10
0204un3_A_A20_G21AAAAA08680.34 AA08
0214un3_A_G21_U22AAAAA08910.13 AA08
0224un3_A_U22_U23AAAAA08800.22 AA08
0234un3_A_U23_U24AAwAA06430.42 AA06
0244un3_A_U24_U25AAAAA08930.18 AA08
0254un3_A_U25_A26AAAAA00800.18 AA00
0264un3_A_A26_G27AAwAA01560.44 AA01
0274un3_A_G27_A28NANNANT01.47 OP13
0284un3_A_A28_G29NANNANT00.48 OP17
0294un3_A_G29_C30AAAAA08820.30 AA08
0304un3_A_C30_U31NANNANT00.57 AA10
0314un3_A_U31_A32NANNANT00.67 AA10
0324un3_A_A32_G33AAAAA08340.65 AA08
0334un3_A_G33_A34NANNANT00.52 OP04
0344un3_A_A34_A35NANNANT00.65 AA04
0354un3_A_A35_A36NANNANT00.78 AA08
0364un3_A_A36_U37NANNANT01.05 AA04
0374un3_A_U37_A38NANNANT00.59 AA11
0384un3_A_A38_G39AAwAA06460.43 AA06
0394un3_A_G39_C40NANNANT00.53 AA10
0404un3_A_C40_A41AAAAA08830.27 AA08
0414un3_A_A41_A42NANNANT00.55 AA06
0424un3_A_A42_G43NANNANT00.74 AB02
0434un3_A_G43_U44OPNOP20290.65 OP20
0444un3_A_U44_U45OPNOP11290.57 OP11
0454un3_A_U45_A46AAAAA00800.21 AA00
0464un3_A_A46_A47AAAAA00770.13 AA00
0474un3_A_A47_A48AAAAA00690.29 AA00
0484un3_A_A48_A49AAAAA00940.18 AA00
0494un3_A_A49_U50AAAAA08840.16 AA08
0504un3_A_U50_A51NANNANT01.61 OP02
0514un3_A_A51_A52NANNANT00.91 OPS1
0524un3_A_A52_G53NANNANT00.61 AA05
0534un3_A_G53_G54AAAAA00560.24 AA00
0544un3_A_G54_C55A-BAB05600.30 AB05
0554un3_A_C55_U56NANNANT01.53 BB00
0564un3_A_U56_A57NANNANT00.47 IC06
0574un3_A_A57_G58NANNANT00.57 ZZ02
0584un3_A_G58_U59NANNANT01.05 OP17
0594un3_A_U59_C60NANNANT00.57 OP06
0604un3_A_C60_C61AAAAA00930.16 AA00
0614un3_A_C61_G62AAAAA00810.20 AA00
0624un3_A_G62_U63NANNANT00.90 OP07
0634un3_A_U63_U64OPNOP11780.35 OP11
0644un3_A_U64_A65AAAAA00440.41 AA00
0654un3_A_A65_U66AAAAA08580.34 AA08
0664un3_A_U66_C67AAAAA00160.47 AA00
0674un3_A_C67_A68NANNANT01.46 OP17
0684un3_A_A68_A69NANNANT00.68 AB02
0694un3_A_A69_C70AAAAA08860.15 AA08
0704un3_A_C70_U71AAAAA00870.14 AA00
0714un3_A_U71_U72AAAAA00470.42 AA00
0724un3_A_U72_G73AAwAA01410.31 AA01
0734un3_A_G73_A74NANNANT02.50 OP11
0744un3_A_A74_A75NANNANT00.55 AA03
0754un3_A_A75_A76AAAAA00520.30 AA00
0764un3_A_A76_A77NANNANT00.91 AA08
0774un3_A_A77_A78AAAAA00720.28 AA00
0784un3_A_A78_G79AAAAA04600.37 AA04
0794un3_A_G79_U80AAAAA03780.24 AA03
0804un3_A_U80_G81A-BAB05230.64 AB05
0814un3_C_DC1_DA2A-BAB05290.38 AB05
0824un3_C_DA2_DA3NANNANT00.47 AB02
0834un3_C_DA3_DT4BBBBB00260.41 BB00
0844un3_C_DT4_DA5B12BB04730.23 BB04
0854un3_C_DA5_DC6NANNANT00.34 BA08
0864un3_C_DC6_DC7BBBBB01310.17 BB01
0874un3_C_DC7_DA8A-BAB03610.22 AB03
0884un3_C_DA8_DT9NANNANT00.63 OP17
0894un3_C_DT9_DT10AAAAA00630.40 AA00
0904un3_C_DT10_DT11AAAAA00810.36 AA00
0914un3_C_DT11_DT12AAAAA00860.29 AA00
0924un3_C_DT12_DT13AAAAA00800.28 AA00
0934un3_C_DT13_DT14AAAAA00960.18 AA00
0944un3_C_DT14_DA15AAAAA00970.16 AA00
0954un3_C_DA15_DC16AAAAA00880.29 AA00
0964un3_C_DC16_DA17AAAAA00650.26 AA00
0974un3_C_DA17_DA18AAAAA00830.25 AA00
0984un3_C_DA18_DA19NANNANT00.37 AA01
0994un3_C_DA19_DT20B-ABA0580.39 BA05
1004un3_C_DT20_DT21BBBBB01440.24 BB01
1014un3_C_DT21_DG22BBBBB00330.47 BB00
1024un3_C_DG22_DA23B-ABA08860.27 BA08
1034un3_C_DA23_DG24AAwAA01830.25 AA01
1044un3_C_DG24_DT25AAAAA00240.35 AA00
1054un3_C_DT25_DT26AAAAA00910.23 AA00
1064un3_C_DT26_DA27AAwAA10910.19 AA10
1074un3_C_DA27_DT28A-BAB05650.28 AB05
1084un3_D_DA2_DA3miBBB12410.38 BB12
1094un3_D_DA3_DA4BBBBB00310.63 BB00
1104un3_D_DA4_DT5BB2BB07310.41 BB07
1114un3_D_DT5_DG6BB2BB07400.27 BB07
1124un3_D_DG6_DG7BBwBB02180.46 BB02
1134un3_D_DG7_DT8B-ABA05470.30 BA05
1144un3_D_DT8_DA9A-BAB03740.24 AB03
1154un3_D_DA9_DT10BBBBB00730.18 BB00
1164un3_D_DT10_DT11BBBBB01650.28 BB01
1174un3_D_DT11_DG12NANNANT00.38 BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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