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Conformers: ABBIImiBZICOPNSYNN
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The complex of Spo0J and parS DNA in chromosomal partition system

Results of the assignment of 92 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
014umk_W_DA1_DG2NANNANT00.85 BB10
024umk_W_DG2_DG3B12BB04210.36 BB04
034umk_W_DG3_DG4NANNANT00.37 BA08
044umk_W_DG4_DT5AAAAA02330.59 AA02
054umk_W_DT5_DG6A-BAB01530.27 AB01
064umk_W_DG6_DT7BBBBB00840.20 BB00
074umk_W_DT7_DT8BBBBB00840.35 BB00
084umk_W_DT8_DC9BBBBB00730.22 BB00
094umk_W_DC9_DC10B12BB04140.33 BB04
104umk_W_DC10_DA11BB2BB07660.25 BB07
114umk_W_DA11_DC12BBBBB00200.22 BB00
124umk_W_DC12_DG13B12BB04530.39 BB04
134umk_W_DG13_DT14BBBBB01110.28 BB01
144umk_W_DT14_DG15B-ABA05310.41 BA05
154umk_W_DG15_DA16A-BAB01180.41 AB01
164umk_W_DA16_DA17NANNANT00.41 BB10
174umk_W_DA17_DA18BBBBB01760.22 BB01
184umk_W_DA18_DC19BBBBB01450.22 BB01
194umk_W_DC19_DA20B12BB04640.35 BB04
204umk_W_DA20_DG21NANNANT00.56 BB02
214umk_W_DG21_DG22NANNANT00.77 BB02
224umk_W_DG22_DG23NANNANT00.37 BA17
234umk_W_DG23_DA24NANNANT00.58 BB03
244umk_X_DT1_DC2A-BAB04560.26 AB04
254umk_X_DC2_DC3miBBB15530.30 BB15
264umk_X_DC3_DC4B-ABA08470.52 BA08
274umk_X_DC4_DT5BBBBB01370.24 BB01
284umk_X_DT5_DG6BBBBB00680.35 BB00
294umk_X_DG6_DT7B-ABA05560.25 BA05
304umk_X_DT7_DT8A-BAB03900.29 AB03
314umk_X_DT8_DT9miBBB15500.32 BB15
324umk_X_DT9_DC10miBBB15230.30 BB15
334umk_X_DC10_DA11NANNANT00.45 BB07
344umk_X_DA11_DC12B-ABA05590.35 BA05
354umk_X_DC12_DG13A-BAB01280.23 AB01
364umk_X_DG13_DT14BBBBB01430.23 BB01
374umk_X_DT14_DG15NANNANT00.38 BB00
384umk_X_DG15_DG16BBBBB00520.29 BB00
394umk_X_DG16_DA17B12BB04400.22 BB04
404umk_X_DA17_DA18NANNANT00.34 BB15
414umk_X_DA18_DC19BBBBB00450.28 BB00
424umk_X_DC19_DA20BBBBB00900.18 BB00
434umk_X_DA20_DC21NANNANT00.38 BB02
444umk_X_DC21_DC22miBBB12160.52 BB12
454umk_X_DC22_DC23NANNANT00.74 BA10
464umk_X_DC23_DT24NANNANT00.72 AA01
474umk_Y_DT1_DC2NANNANT00.74 BB03
484umk_Y_DC2_DC3BBwBB03880.23 BB03
494umk_Y_DC3_DC4NANNANT00.34 BB03
504umk_Y_DC4_DT5BBwBB02280.32 BB02
514umk_Y_DT5_DG6BBwBB02360.42 BB02
524umk_Y_DG6_DT7BBwBB02100.28 BB02
534umk_Y_DT7_DT8BBBBB00530.25 BB00
544umk_Y_DT8_DT9BBBBB00870.22 BB00
554umk_Y_DT9_DC10B12BB04660.32 BB04
564umk_Y_DC10_DA11BB2BB07360.28 BB07
574umk_Y_DA11_DC12BBBBB00210.22 BB00
584umk_Y_DC12_DG13B12BB04110.38 BB04
594umk_Y_DG13_DT14NANNANT00.49 BB17
604umk_Y_DT14_DG15NANNANT00.47 AB02
614umk_Y_DG15_DG16NANNANT00.49 BB02
624umk_Y_DG16_DA17NANNANT00.53 BB15
634umk_Y_DA17_DA18BBBBB00700.24 BB00
644umk_Y_DA18_DC19B-ABA17680.31 BA17
654umk_Y_DC19_DA20BBBBB00680.25 BB00
664umk_Y_DA20_DC21NANNANT00.71 BA16
674umk_Y_DC21_DC22AAwAA11700.59 AA11
684umk_Y_DC22_DC23NANNANT00.48 AB03
694umk_Y_DC23_DT24NANNANT00.80 BB12
704umk_Z_DA1_DG2BBwBB11230.54 BB11
714umk_Z_DG2_DG3BBBBB01640.17 BB01
724umk_Z_DG3_DG4B-ABA05750.35 BA05
734umk_Z_DG4_DT5NANNANT00.36 BB02
744umk_Z_DT5_DG6NANNANT00.48 BB02
754umk_Z_DG6_DT7NANNANT00.38 BB01
764umk_Z_DT7_DT8BBBBB00670.23 BB00
774umk_Z_DT8_DC9NANNANT00.32 BB02
784umk_Z_DC9_DC10NANNANT00.41 BB15
794umk_Z_DC10_DA11NANNANT00.34 BB07
804umk_Z_DA11_DC12B-ABA08650.35 BA08
814umk_Z_DC12_DG13A-BAB01670.20 AB01
824umk_Z_DG13_DT14BBBBB00600.23 BB00
834umk_Z_DT14_DG15miBBB15450.49 BB15
844umk_Z_DG15_DA16NANNANT00.22 BB04
854umk_Z_DA16_DA17B12BB04550.23 BB04
864umk_Z_DA17_DA18B12BB04150.42 BB04
874umk_Z_DA18_DC19BBBBB00620.31 BB00
884umk_Z_DC19_DA20BBBBB00950.20 BB00
894umk_Z_DA20_DG21B-ABA09690.28 BA09
904umk_Z_DG21_DG22NANNANT00.34 AB04
914umk_Z_DG22_DG23NANNANT00.38 AB03
924umk_Z_DG23_DA24NANNANT01.04 BB11

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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