Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of a pre-cleavage Mos1 transpososome

Results of the assignment of 162 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0014u7b_C_DG4_DG5NANNANT00.87 IC03
0024u7b_C_DG5_DT6BBBBB00320.41 BB00
0034u7b_C_DT6_DG7NANNANT00.31 BA08
0044u7b_C_DG7_DT8BBBBB00290.28 BB00
0054u7b_C_DT8_DA9BBBBB00800.17 BB00
0064u7b_C_DA9_DC10NANNANT00.35 BA13
0074u7b_C_DC10_DA11A-BAB05410.33 AB05
0084u7b_C_DA11_DA12BBBBB00720.18 BB00
0094u7b_C_DA12_DG13BBwBB02490.30 BB02
0104u7b_C_DG13_DT14BBwBB02240.35 BB02
0114u7b_C_DT14_DA15BBBBB00600.25 BB00
0124u7b_C_DA15_DT16BBBBB00780.29 BB00
0134u7b_C_DT16_DG17BBBBB00200.48 BB00
0144u7b_C_DG17_DA18BB2BB07380.46 BB07
0154u7b_C_DA18_DA19miBBB13870.19 BB13
0164u7b_C_DA19_DA20BBwBB16400.41 BB16
0174u7b_C_DA20_DT21BBwBB02470.20 BB02
0184u7b_C_DT21_DG22NANNANT00.44 BB00
0194u7b_C_DG22_DT23BBwBB02510.25 BB02
0204u7b_C_DT23_DC24BBBBB00670.30 BB00
0214u7b_C_DC24_DG25B12BB04310.41 BB04
0224u7b_C_DG25_DT26BBBBB00770.25 BB00
0234u7b_C_DT26_DT27BBBBB00550.24 BB00
0244u7b_C_DT27_DT28miBBB15710.29 BB15
0254u7b_D_DA29_DA30NANNANT00.56 BB02
0264u7b_D_DA30_DA31B-ABA05360.40 BA05
0274u7b_D_DA31_DC32BBwBB02230.29 BB02
0284u7b_D_DC32_DG33NANNANT00.51 BB02
0294u7b_D_DG33_DA34NANNANT00.47 BB02
0304u7b_D_DA34_DC35B-ABA05800.28 BA05
0314u7b_D_DC35_DA36NANNANT00.55 AA06
0324u7b_D_DA36_DT37NANNANT00.44 AB04
0334u7b_D_DT37_DT38NANNANT00.45 BA05
0344u7b_D_DT38_DT39BBwBB02190.33 BB02
0354u7b_D_DT39_DC40BBBBB00540.43 BB00
0364u7b_D_DC40_DA41NANNANT00.55 BB08
0374u7b_D_DA41_DT42B-ABA05340.26 BA05
0384u7b_D_DT42_DA43NANNANT00.35 AB02
0394u7b_D_DA43_DC44B-ABA10700.29 BA10
0404u7b_D_DC44_DT45AAwAA06350.45 AA06
0414u7b_D_DT45_DT46NANNANT00.38 AA08
0424u7b_D_DT46_DG47BBBBB00130.25 BB00
0434u7b_D_DG47_DT48BBBBB01820.22 BB01
0444u7b_D_DT48_DA49BBBBB00530.37 BB00
0454u7b_D_DA49_DC50BBBBB00680.32 BB00
0464u7b_D_DC50_DA51NANNANT00.36 BB08
0474u7b_D_DA51_DC52BBBBB00150.41 BB00
0484u7b_D_DC52_DC53BBBBB00360.34 BB00
0494u7b_D_DC53_DT54NANNANT00.58 AB1S
0504u7b_D_DT54_DG55NANNANT00.60 AAS1
0514u7b_D_DG55_DA56NANNANT00.82 BB12
0524u7b_D_DA56_DT57NANNANT00.53 IC06
0534u7b_D_DT57_DA58NANNANT00.47 IC06
0544u7b_D_DA58_DG59BBBBB00820.30 BB00
0554u7b_E_DG4_DG5BBBBB00320.45 BB00
0564u7b_E_DG5_DT6BBBBB00850.18 BB00
0574u7b_E_DT6_DG7BBBBB01260.20 BB01
0584u7b_E_DG7_DT8BBBBB01540.23 BB01
0594u7b_E_DT8_DA9BBBBB00420.19 BB00
0604u7b_E_DA9_DC10B-ABA08620.29 BA08
0614u7b_E_DC10_DA11NANNANT00.50 AA02
0624u7b_E_DA11_DA12NANNANT00.53 BA10
0634u7b_E_DA12_DG13AAAAA04610.39 AA04
0644u7b_E_DG13_DT14NANNANT00.47 AA00
0654u7b_E_DT14_DA15NANNANT00.54 BB03
0664u7b_E_DA15_DT16BBwBB0260.41 BB02
0674u7b_E_DT16_DG17BBBBB00620.56 BB00
0684u7b_E_DG17_DA18B-ABA17490.55 BA17
0694u7b_E_DA18_DA19NANNANT00.59 BA10
0704u7b_E_DA19_DA20A-BAB01280.39 AB01
0714u7b_E_DA20_DT21B-ABA05800.19 BA05
0724u7b_E_DT21_DG22BBBBB01660.21 BB01
0734u7b_E_DG22_DT23BBBBB00320.22 BB00
0744u7b_E_DT23_DC24BBwBB02600.21 BB02
0754u7b_E_DC24_DG25BBBBB00480.45 BB00
0764u7b_E_DG25_DT26NANNANT00.49 BA05
0774u7b_E_DT26_DT27NANNANT00.44 AA04
0784u7b_E_DT27_DT28NANNANT00.47 BB03
0794u7b_F_DA29_DA30A-BAB04350.40 AB04
0804u7b_F_DA30_DA31BBwBB02600.28 BB02
0814u7b_F_DA31_DC32NANNANT00.55 BA08
0824u7b_F_DC32_DG33NANNANT00.56 AA06
0834u7b_F_DG33_DA34NANNANT00.63 BB02
0844u7b_F_DA34_DC35BBBBB00550.31 BB00
0854u7b_F_DC35_DA36BBBBB00340.29 BB00
0864u7b_F_DA36_DT37miBBB15640.23 BB15
0874u7b_F_DT37_DT38BBBBB01330.31 BB01
0884u7b_F_DT38_DT39BBwBB02740.20 BB02
0894u7b_F_DT39_DC40BBBBB00680.44 BB00
0904u7b_F_DC40_DA41BB2BB07440.35 BB07
0914u7b_F_DA41_DT42BBwBB02210.24 BB02
0924u7b_F_DT42_DA43NANNANT00.37 BB16
0934u7b_F_DA43_DC44B-ABA10270.32 BA10
0944u7b_F_DC44_DT45AAAAA04770.32 AA04
0954u7b_F_DT45_DT46NANNANT00.53 AA10
0964u7b_F_DT46_DG47NANNANT00.40 BB03
0974u7b_F_DG47_DT48NANNANT00.62 BA09
0984u7b_F_DT48_DA49A-BAB05580.33 AB05
0994u7b_F_DA49_DC50BBBBB00760.27 BB00
1004u7b_F_DC50_DA51BB2BB07710.27 BB07
1014u7b_F_DA51_DC52BBBBB00840.21 BB00
1024u7b_F_DC52_DC53BBBBB00420.34 BB00
1034u7b_F_DC53_DT54NANNANT00.45 BB10
1044u7b_F_DT54_DG55B-ABA08390.25 BA08
1054u7b_F_DG55_DA56NANNANT00.90 BB12
1064u7b_F_DA56_DT57NANNANT00.48 IC06
1074u7b_F_DT57_DA58NANNANT01.25 AB02
1084u7b_F_DA58_DG59B12BB04580.38 BB04
1094u7b_H_DG4_DG5BBBBB00100.30 BB00
1104u7b_H_DG5_DT6NANNANT00.33 BB02
1114u7b_H_DT6_DG7BBBBB00310.36 BB00
1124u7b_H_DG7_DT8BBBBB00850.29 BB00
1134u7b_H_DT8_DA9BBBBB00890.15 BB00
1144u7b_H_DA9_DC10NANNANT00.36 BA13
1154u7b_H_DC10_DA11NANNANT00.53 AA00
1164u7b_H_DA11_DA12A-BAB03860.13 AB03
1174u7b_H_DA12_DG13NANNANT00.49 BA10
1184u7b_H_DG13_DT14NANNANT00.50 AA00
1194u7b_H_DT14_DA15A-BAB01520.20 AB01
1204u7b_H_DA15_DT16BBBBB00510.36 BB00
1214u7b_H_DT16_DG17BBBBB00250.46 BB00
1224u7b_H_DG17_DA18NANNANT00.65 BA08
1234u7b_H_DA18_DA19NANNANT00.30 BB13
1244u7b_H_DA19_DA20BBwBB16580.37 BB16
1254u7b_H_DA20_DT21BBwBB02690.16 BB02
1264u7b_H_DT21_DG22BBwBB02630.29 BB02
1274u7b_H_DG22_DT23BBwBB02650.21 BB02
1284u7b_H_DT23_DC24BBBBB00670.33 BB00
1294u7b_H_DC24_DG25B12BB04300.40 BB04
1304u7b_H_DG25_DT26NANNANT00.37 BA05
1314u7b_H_DT26_DT27A-BAB0150.42 AB01
1324u7b_H_DT27_DT28A-BAB03230.27 AB03
1334u7b_I_DA29_DA30BBwBB16670.43 BB16
1344u7b_I_DA30_DA31B-ABA05690.27 BA05
1354u7b_I_DA31_DC32B-ABA05240.43 BA05
1364u7b_I_DC32_DG33BBBBB01150.28 BB01
1374u7b_I_DG33_DA34miBBB12200.67 BB12
1384u7b_I_DA34_DC35NANNANT00.51 BA10
1394u7b_I_DC35_DA36BBBBB00330.33 BB00
1404u7b_I_DA36_DT37B-ABA01240.15 BA01
1414u7b_I_DT37_DT38NANNANT00.41 BB03
1424u7b_I_DT38_DT39BBwBB02280.31 BB02
1434u7b_I_DT39_DC40BBBBB00420.48 BB00
1444u7b_I_DC40_DA41BB2BB08490.44 BB08
1454u7b_I_DA41_DT42B-ABA05180.30 BA05
1464u7b_I_DT42_DA43A-BAB02520.34 AB02
1474u7b_I_DA43_DC44B-ABA10670.29 BA10
1484u7b_I_DC44_DT45AAAAA04890.26 AA04
1494u7b_I_DT45_DT46A-BAB05660.20 AB05
1504u7b_I_DT46_DG47BBBBB00830.17 BB00
1514u7b_I_DG47_DT48miBBB12490.40 BB12
1524u7b_I_DT48_DA49NANNANT00.53 BB15
1534u7b_I_DA49_DC50BBBBB00520.32 BB00
1544u7b_I_DC50_DA51NANNANT00.35 BB08
1554u7b_I_DA51_DC52BBBBB01590.36 BB01
1564u7b_I_DC52_DC53BBBBB00490.30 BB00
1574u7b_I_DC53_DT54NANNANT00.70 AB1S
1584u7b_I_DT54_DG55NANNANT00.49 AAS1
1594u7b_I_DG55_DA56NANNANT00.76 BA09
1604u7b_I_DA56_DT57NANNANT00.47 IC06
1614u7b_I_DT57_DA58NANNANT00.47 IC06
1624u7b_I_DA58_DG59NANNANT00.52 BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N