Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structural mechanism of error-free bypass of major benzo[a]pyrene adduct by human polymerase kappa
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4u6p_C_DG5_DC6 | BBw | BB02 | 28 | 0.31 |
| 02 | 4u6p_C_DC6_DG7 | BBB | BB00 | 72 | 0.22 |
| 03 | 4u6p_C_DG7_DG8 | BBB | BB00 | 69 | 0.32 |
| 04 | 4u6p_C_DG8_DA9 | miB | BB15 | 68 | 0.16 |
| 05 | 4u6p_C_DA9_DT10 | BBB | BB00 | 46 | 0.18 |
| 06 | 4u6p_C_DT10_DC11 | B-A | BA05 | 40 | 0.17 |
| 07 | 4u6p_C_DC11_DA12 | A-B | AB01 | 39 | 0.27 |
| 08 | 4u6p_D_DT2_DA3 | NAN | NANT | 0 | 0.58 |
| 09 | 4u6p_D_DA3_DT4 | NAN | NANT | 0 | 0.82 |
| 10 | 4u6p_D_DT4_DG5 | NAN | NANT | 0 | 1.09 |
| 11 | 4u6p_D_DG5_DG6 | BBB | BB00 | 69 | 0.26 |
| 12 | 4u6p_D_DG6_DT7 | BBB | BB00 | 77 | 0.28 |
| 13 | 4u6p_D_DT7_DG8 | BBB | BB00 | 83 | 0.18 |
| 14 | 4u6p_D_DG8_DA9 | NAN | NANT | 0 | 0.36 |
| 15 | 4u6p_D_DA9_DT10 | BBB | BB01 | 39 | 0.22 |
| 16 | 4u6p_D_DT10_DC11 | BBB | BB00 | 55 | 0.18 |
| 17 | 4u6p_D_DC11_DC12 | BBB | BB00 | 62 | 0.19 |
| 18 | 4u6p_D_DC12_DG13 | B12 | BB04 | 40 | 0.25 |
| 19 | 4u6p_D_DG13_DC14 | NAN | NANT | 0 | 0.43 |
| 20 | 4u6p_P_DG5_DC6 | BBw | BB02 | 23 | 0.34 |
| 21 | 4u6p_P_DC6_DG7 | BBB | BB00 | 68 | 0.24 |
| 22 | 4u6p_P_DG7_DG8 | BBB | BB00 | 69 | 0.33 |
| 23 | 4u6p_P_DG8_DA9 | miB | BB15 | 66 | 0.18 |
| 24 | 4u6p_P_DA9_DT10 | BBB | BB00 | 42 | 0.22 |
| 25 | 4u6p_P_DT10_DC11 | B-A | BA05 | 77 | 0.20 |
| 26 | 4u6p_P_DC11_DA12 | A-B | AB01 | 26 | 0.30 |
| 27 | 4u6p_T_DT2_DA3 | BBB | BB00 | 24 | 0.54 |
| 28 | 4u6p_T_DA3_DT4 | NAN | NANT | 0 | 0.82 |
| 29 | 4u6p_T_DT4_DG5 | NAN | NANT | 0 | 1.13 |
| 30 | 4u6p_T_DG5_DG6 | BBB | BB00 | 68 | 0.28 |
| 31 | 4u6p_T_DG6_DT7 | BBB | BB00 | 79 | 0.26 |
| 32 | 4u6p_T_DT7_DG8 | BBB | BB00 | 83 | 0.19 |
| 33 | 4u6p_T_DG8_DA9 | NAN | NANT | 0 | 0.40 |
| 34 | 4u6p_T_DA9_DT10 | BBB | BB01 | 51 | 0.18 |
| 35 | 4u6p_T_DT10_DC11 | BBB | BB00 | 39 | 0.17 |
| 36 | 4u6p_T_DC11_DC12 | BBB | BB00 | 61 | 0.19 |
| 37 | 4u6p_T_DC12_DG13 | B12 | BB04 | 48 | 0.21 |
| 38 | 4u6p_T_DG13_DC14 | NAN | NANT | 0 | 0.47 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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