Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of a left-handed DNA G-quadruplex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 31 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4u5m_A_DT1_DG2 | NAN | NANT | 0 | 1.03 |
| 02 | 4u5m_A_DG2_DG3 | NAN | NANT | 0 | 0.60 |
| 03 | 4u5m_A_DG3_DT4 | NAN | NANT | 0 | 0.91 |
| 04 | 4u5m_A_DT4_DG.A5 | NAN | NANT | 0 | 1.52 |
| 05 | 4u5m_A_DT4_DG.B5 | NAN | NANT | 0 | 2.26 |
| 06 | 4u5m_A_DG.A5_DG6 | NAN | NANT | 0 | 0.85 |
| 07 | 4u5m_A_DG.B5_DG6 | NAN | NANT | 0 | 0.85 |
| 08 | 4u5m_A_DG6_DT7 | NAN | NANT | 0 | 0.75 |
| 09 | 4u5m_A_DT7_DG8 | NAN | NANT | 0 | 1.04 |
| 10 | 4u5m_A_DG8_DG9 | NAN | NANT | 0 | 0.85 |
| 11 | 4u5m_A_DG9_DT.A10 | NAN | NANT | 0 | 0.79 |
| 12 | 4u5m_A_DG9_DT.B10 | NAN | NANT | 0 | 0.84 |
| 13 | 4u5m_A_DT.A10_DG11 | NAN | NANT | 0 | 1.09 |
| 14 | 4u5m_A_DT.B10_DG11 | NAN | NANT | 0 | 1.62 |
| 15 | 4u5m_A_DG11_DG12 | NAN | NANT | 0 | 0.85 |
| 16 | 4u5m_A_DG12_DT13 | NAN | NANT | 0 | 0.81 |
| 17 | 4u5m_A_DT13_DT14 | NAN | NANT | 0 | 0.60 |
| 18 | 4u5m_A_DT14_DG15 | NAN | NANT | 0 | 0.64 |
| 19 | 4u5m_A_DG15_DT16 | NAN | NANT | 0 | 0.66 |
| 20 | 4u5m_A_DT16_DG17 | NAN | NANT | 0 | 1.01 |
| 21 | 4u5m_A_DG17_DG18 | NAN | NANT | 0 | 0.86 |
| 22 | 4u5m_A_DG18_DT19 | NAN | NANT | 0 | 0.78 |
| 23 | 4u5m_A_DT19_DG20 | NAN | NANT | 0 | 0.99 |
| 24 | 4u5m_A_DG20_DG21 | NAN | NANT | 0 | 0.85 |
| 25 | 4u5m_A_DG21_DT22 | NAN | NANT | 0 | 0.64 |
| 26 | 4u5m_A_DT22_DG23 | NAN | NANT | 0 | 0.96 |
| 27 | 4u5m_A_DG23_DG24 | NAN | NANT | 0 | 0.85 |
| 28 | 4u5m_A_DG24_DT25 | NAN | NANT | 0 | 0.57 |
| 29 | 4u5m_A_DT25_DG26 | NAN | NANT | 0 | 0.96 |
| 30 | 4u5m_A_DG26_DT27 | NAN | NANT | 0 | 1.49 |
| 31 | 4u5m_A_DT27_DT28 | NAN | NANT | 0 | 1.71 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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