DNATCO v4.1: results

Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and replacing Mg2+ with Sr2+ post crystallization

Results of the assignment of 171 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	4tzw_B_G5_A6	AAA	AA00	50	0.22	AA00
002	4tzw_B_A6_G7	A-B	AB05	54	0.26	AB05
003	4tzw_B_G7_U8	OPN	OP11	64	0.41	OP11
004	4tzw_B_U8_A9	NAN	NANT	0	0.97	IC02
005	4tzw_B_A9_G10	NAN	NANT	0	1.03	OP26
006	4tzw_B_G10_U11	AAA	AA00	59	0.24	AA00
007	4tzw_B_U11_U12	AAA	AA00	89	0.14	AA00
008	4tzw_B_U12_C13	NAN	NANT	0	0.43	AA10
009	4tzw_B_C13_A14	AAw	AA01	32	0.40	AA01
010	4tzw_B_A14_G15	AAA	AA08	42	0.57	AA08
011	4tzw_B_G17_G18	NAN	NANT	0	0.38	IC05
012	4tzw_B_G18_U19	NAN	NANT	0	1.25	OP22
013	4tzw_B_U19_A20	NAN	NANT	0	2.00	OP20
014	4tzw_B_A20_G21	NAN	NANT	0	0.83	BA16
015	4tzw_B_G21_A22	AAA	AA08	57	0.47	AA08
016	4tzw_B_A22_A23	AAA	AA08	70	0.38	AA08
017	4tzw_B_A23_C24	AAA	AA08	84	0.28	AA08
018	4tzw_B_C24_A25	AAA	AA04	78	0.29	AA04
019	4tzw_B_A25_C26	AAA	AA04	53	0.44	AA04
020	4tzw_B_C26_C27	AAA	AA00	57	0.23	AA00
021	4tzw_B_C27_A28	AAA	AA00	69	0.17	AA00
022	4tzw_B_A28_C29	AAA	AA00	74	0.16	AA00
023	4tzw_B_C29_C30	AAA	AA04	84	0.23	AA04
024	4tzw_B_C30_U31	ZZZ	ZZ01	59	0.34	ZZ01
025	4tzw_B_U31_U32	NAN	NANT	0	1.05	OP16
026	4tzw_B_U32_G33	NAN	NANT	0	0.82	OP18
027	4tzw_B_G33_C34	AAA	AA00	78	0.18	AA00
028	4tzw_B_C34_C35	AAw	AA10	71	0.33	AA10
029	4tzw_B_C35_A36	AAA	AA00	46	0.39	AA00
030	4tzw_B_A36_A37	AAA	AA08	65	0.30	AA08
031	4tzw_B_A37_G38	AAA	AA08	75	0.24	AA08
032	4tzw_B_G38_G39	NAN	NANT	0	0.29	AA03
033	4tzw_B_G39_U40	AAw	AA01	64	0.23	AA01
034	4tzw_B_U40_G41	AAw	AA11	58	0.36	AA11
035	4tzw_B_G41_G42	A-B	AB05	27	0.39	AB05
036	4tzw_B_G42_G43	NAN	NANT	0	0.31	BB15
037	4tzw_B_G43_G44	NAN	NANT	0	0.40	BB10
038	4tzw_B_G44_G45	NAN	NANT	0	0.94	BB00
039	4tzw_B_C47_G48	NAN	NANT	0	0.65	OP21
040	4tzw_B_G48_C49	AAA	AA00	20	0.28	AA00
041	4tzw_B_C49_G50	AAA	AA00	20	0.21	AA00
042	4tzw_B_G50_G51	AAw	AA01	15	0.31	AA01
043	4tzw_B_G51_G52	AAA	AA08	45	0.33	AA08
044	4tzw_B_G52_U53	AAA	AA08	81	0.26	AA08
045	4tzw_B_U53_U54	AAA	AA00	8	0.53	AA00
046	4tzw_B_U54_C55	OPN	OP04	32	0.22	OP04
047	4tzw_B_C55_G56	AAA	AA08	73	0.32	AA08
048	4tzw_B_G56_A57	ICL	IC01	87	0.32	IC01
049	4tzw_B_A57_A58	OPN	OP25	65	0.27	OP25
050	4tzw_B_A58_U59	A-B	AB05	76	0.34	AB05
051	4tzw_B_U59_C60	OPN	OP12	50	0.24	OP12
052	4tzw_B_C60_C61	AAA	AA03	71	0.22	AA03
053	4tzw_B_C61_C62	AAA	AA04	74	0.34	AA04
054	4tzw_B_C62_G63	AAA	AA00	62	0.21	AA00
055	4tzw_B_G63_U64	AAA	AA08	92	0.13	AA08
056	4tzw_B_U64_C65	AAA	AA08	46	0.38	AA08
057	4tzw_B_C65_U66	AAA	AA00	72	0.14	AA00
058	4tzw_B_U66_C67	AAA	AA00	76	0.16	AA00
059	4tzw_B_C67_G68	AAA	AA00	32	0.34	AA00
060	4tzw_B_G68_G69	AAA	AA03	77	0.21	AA03
061	4tzw_B_G69_G70	AAA	AA08	79	0.27	AA08
062	4tzw_B_G70_C71	AAA	AA00	39	0.28	AA00
063	4tzw_B_C71_G72	AAA	AA00	56	0.33	AA00
064	4tzw_B_G72_A73	NAN	NANT	0	1.53	OP29
065	4tzw_B_A73_A74	AAA	AA08	13	0.42	AA08
066	4tzw_B_A74_A75	AAA	AA00	44	0.34	AA00
067	4tzw_B_A75_G76	AAw	AA05	59	0.29	AA05
068	4tzw_B_G76_C77	AAA	AA03	76	0.28	AA03
069	4tzw_B_C77_C78	AAA	AA04	71	0.24	AA04
070	4tzw_B_C78_C79	AAA	AA00	30	0.31	AA00
071	4tzw_C_G1_G2	AAA	AA00	51	0.38	AA00
072	4tzw_C_G2_G3	AAA	AA00	54	0.34	AA00
073	4tzw_C_G3_U4	AAw	AA01	65	0.21	AA01
074	4tzw_C_U4_G5	AAA	AA08	67	0.24	AA08
075	4tzw_C_G5_C6	AAA	AA08	86	0.20	AA08
076	4tzw_C_C6_G7	AAA	AA00	45	0.27	AA00
077	4tzw_C_G7_A8	NAN	NANT	0	0.95	BB2S
078	4tzw_C_A8_U9	NAN	NANT	0	0.52	OP21
079	4tzw_C_U9_G10	NAN	NANT	0	0.96	OP20
080	4tzw_C_G10_A11	NAN	NANT	0	0.37	OP10
081	4tzw_C_A11_G12	AAA	AA08	71	0.46	AA08
082	4tzw_C_G12_A13	AAA	AA00	51	0.22	AA00
083	4tzw_C_A13_A14	AAA	AA08	84	0.12	AA08
084	4tzw_C_A14_G15	AAA	AA00	56	0.18	AA00
085	4tzw_C_G15_A16	AAA	AA08	67	0.32	AA08
086	4tzw_C_A16_A17	NAN	NANT	0	0.68	AB2S
087	4tzw_C_A17_G18	NAN	NANT	0	0.52	AAS1
088	4tzw_C_G18_A19	ZZZ	ZZ01	61	0.28	ZZ01
089	4tzw_C_A19_G20	NAN	NANT	0	1.46	BB08
090	4tzw_C_G20_U21	OPN	OP15	34	0.35	OP15
091	4tzw_C_U21_A22	AAA	AA00	64	0.26	AA00
092	4tzw_C_A22_U23	AAA	AA08	16	0.67	AA08
093	4tzw_C_U23_U24	AAu	AA12	72	0.28	AA12
094	4tzw_C_U24_A25	AAw	AA01	51	0.28	AA01
095	4tzw_C_A25_A26	AAw	AA10	8	0.66	AA10
096	4tzw_C_A26_G27	NAN	NANT	0	0.47	AA10
097	4tzw_C_G27_G28	AAA	AA08	85	0.20	AA08
098	4tzw_C_G28_A29	AAA	AA08	86	0.22	AA08
099	4tzw_C_A29_U30	NAN	NANT	0	0.41	AB05
100	4tzw_C_U30_U31	NAN	NANT	0	1.24	OP27
101	4tzw_C_U31_U32	NAN	NANT	0	0.55	AA10
102	4tzw_C_U32_A33	AAw	AA06	72	0.40	AA06
103	4tzw_C_A33_C34	AAA	AA03	75	0.20	AA03
104	4tzw_C_C34_U35	AAA	AA08	75	0.21	AA08
105	4tzw_C_U35_A36	AAA	AA08	61	0.23	AA08
106	4tzw_C_A36_U37	AAA	AA00	81	0.20	AA00
107	4tzw_C_U37_G38	SYN	AB2S	50	0.32	AB2S
108	4tzw_C_G38_A39	NAN	NANT	0	1.89	OPS1
109	4tzw_C_A39_U40	AAA	AA00	37	0.34	AA00
110	4tzw_C_U40_U41	AAA	AA00	64	0.37	AA00
111	4tzw_C_U41_A42	NAN	NANT	0	0.56	BB2S
112	4tzw_C_A42_G43	SYN	AAS1	20	0.61	AAS1
113	4tzw_C_G43_C44	OPN	OP03	59	0.26	OP03
114	4tzw_C_C44_G45	AAA	AA04	69	0.45	AA04
115	4tzw_C_G45_A46	ICL	IC01	75	0.34	IC01
116	4tzw_C_A46_C47	OPN	OP14	32	0.54	OP14
117	4tzw_C_C47_U48	AAA	AA00	83	0.25	AA00
118	4tzw_C_U48_C49	AAA	AA00	83	0.24	AA00
119	4tzw_C_C49_U50	AAA	AA00	73	0.22	AA00
120	4tzw_C_U50_A51	AAA	AA08	71	0.21	AA08
121	4tzw_C_A51_G52	AAw	AA06	71	0.28	AA06
122	4tzw_C_G52_G53	AAw	AA11	58	0.46	AA11
123	4tzw_C_G53_A54	NAN	NANT	0	0.82	AA03
124	4tzw_C_A54_U55	NAN	NANT	0	0.50	BB15
125	4tzw_C_U55_A56	NAN	NANT	0	1.02	OP04
126	4tzw_C_A56_G57	AAA	AA00	63	0.27	AA00
127	4tzw_C_G57_U58	AAA	AA08	75	0.20	AA08
128	4tzw_C_U58_G59	AAw	AA01	11	0.45	AA01
129	4tzw_C_G59_A60	NAN	NANT	0	0.25	OP04
130	4tzw_C_A60_A61	AAA	AA08	62	0.33	AA08
131	4tzw_C_A61_A62	NAN	NANT	0	0.49	IC04
132	4tzw_C_A62_G63	NAN	NANT	0	0.60	IC05
133	4tzw_C_G63_C64	NAN	NANT	0	0.59	OP12
134	4tzw_C_C64_U65	AAA	AA08	82	0.26	AA08
135	4tzw_C_U65_A66	AAA	AA00	41	0.18	AA00
136	4tzw_C_A66_G67	AAw	AA01	60	0.24	AA01
137	4tzw_C_G67_A68	AAA	AA08	88	0.17	AA08
138	4tzw_C_A68_G69	AAA	AA08	59	0.29	AA08
139	4tzw_C_G69_G70	AAw	AA01	36	0.40	AA01
140	4tzw_C_G70_A71	AAw	AA11	28	0.51	AA11
141	4tzw_C_A71_U72	AAu	AA12	28	0.65	AA12
142	4tzw_C_U72_A73	AAw	AA06	29	0.34	AA06
143	4tzw_C_A73_G74	AAA	AA08	35	0.33	AA08
144	4tzw_C_G74_U75	AAw	AA01	60	0.19	AA01
145	4tzw_C_U75_A76	NAN	NANT	0	0.47	AA11
146	4tzw_C_A76_A77	AAA	AA00	14	0.44	AA00
147	4tzw_C_A77_C78	AAu	AA12	39	0.57	AA12
148	4tzw_C_C78_C79	AAw	AA10	49	0.28	AA10
149	4tzw_C_C79_U80	AAA	AA08	12	0.35	AA08
150	4tzw_C_U80_U81	AAA	AA08	69	0.29	AA08
151	4tzw_C_U81_A82	AAA	AA08	78	0.26	AA08
152	4tzw_C_A82_A83	AAw	AA06	45	0.39	AA06
153	4tzw_C_A83_G84	AAA	AA08	78	0.31	AA08
154	4tzw_C_G84_A85	OPN	OP08	44	0.25	OP08
155	4tzw_C_A85_A86	AAA	AA08	68	0.38	AA08
156	4tzw_C_A86_G87	AAu	AA07	44	0.49	AA07
157	4tzw_C_G87_G88	AAA	AA00	66	0.27	AA00
158	4tzw_C_G88_C89	AAA	AA00	83	0.21	AA00
159	4tzw_C_C89_A90	AAA	AA08	62	0.34	AA08
160	4tzw_C_A90_C91	NAN	NANT	0	0.66	AA12
161	4tzw_C_C91_U92	NAN	NANT	0	0.31	AA03
162	4tzw_C_U92_U93	NAN	NANT	0	0.43	AA06
163	4tzw_C_U93_C94	AAA	AA08	85	0.21	AA08
164	4tzw_C_C94_G95	A-B	AB05	60	0.44	AB05
165	4tzw_C_G95_A96	NAN	NANT	0	1.06	OP22
166	4tzw_C_A96_G97	OPN	OP24	70	0.29	OP24
167	4tzw_C_G97_C98	AAA	AA08	73	0.19	AA08
168	4tzw_C_C98_A99	AAA	AA08	54	0.29	AA08
169	4tzw_C_A99_C100	AAA	AA00	58	0.25	AA00
170	4tzw_C_C100_C101	AAA	AA00	76	0.31	AA00
171	4tzw_C_C101_C102	A-B	AB04	71	0.32	AB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 171 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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