DNATCO v4.1: results

Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate post crystallization

Results of the assignment of 171 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	4tzv_B_G5_A6	AAA	AA08	67	0.29	AA08
002	4tzv_B_A6_G7	A-B	AB05	35	0.25	AB05
003	4tzv_B_G7_U8	NAN	NANT	0	0.42	OP11
004	4tzv_B_U8_A9	NAN	NANT	0	0.91	IC02
005	4tzv_B_A9_G10	NAN	NANT	0	1.04	OP26
006	4tzv_B_G10_U11	AAA	AA00	73	0.23	AA00
007	4tzv_B_U11_U12	AAA	AA00	76	0.17	AA00
008	4tzv_B_U12_C13	NAN	NANT	0	0.42	AA10
009	4tzv_B_C13_A14	AAw	AA01	33	0.38	AA01
010	4tzv_B_A14_G15	AAA	AA08	51	0.50	AA08
011	4tzv_B_G17_G18	NAN	NANT	0	0.51	IC05
012	4tzv_B_G18_U19	NAN	NANT	0	1.26	OP22
013	4tzv_B_U19_A20	NAN	NANT	0	1.52	IC02
014	4tzv_B_A20_G21	NAN	NANT	0	0.79	BA16
015	4tzv_B_G21_A22	AAA	AA08	57	0.48	AA08
016	4tzv_B_A22_A23	AAA	AA08	74	0.39	AA08
017	4tzv_B_A23_C24	AAA	AA08	84	0.22	AA08
018	4tzv_B_C24_A25	NAN	NANT	0	0.43	AA01
019	4tzv_B_A25_C26	AAA	AA00	13	0.39	AA00
020	4tzv_B_C26_C27	AAA	AA00	76	0.25	AA00
021	4tzv_B_C27_A28	AAA	AA00	74	0.18	AA00
022	4tzv_B_A28_C29	AAA	AA08	81	0.19	AA08
023	4tzv_B_C29_C30	AAA	AA04	92	0.20	AA04
024	4tzv_B_C30_U31	ZZZ	ZZ01	47	0.43	ZZ01
025	4tzv_B_U31_U32	NAN	NANT	0	1.19	OP16
026	4tzv_B_U32_G33	NAN	NANT	0	0.87	OP18
027	4tzv_B_G33_C34	AAA	AA00	89	0.11	AA00
028	4tzv_B_C34_C35	NAN	NANT	0	0.41	AA10
029	4tzv_B_C35_A36	AAA	AA08	81	0.40	AA08
030	4tzv_B_A36_A37	AAA	AA08	71	0.26	AA08
031	4tzv_B_A37_G38	AAA	AA08	60	0.35	AA08
032	4tzv_B_G38_G39	AAA	AA03	39	0.23	AA03
033	4tzv_B_G39_U40	AAw	AA06	83	0.22	AA06
034	4tzv_B_U40_G41	AAw	AA11	69	0.34	AA11
035	4tzv_B_G41_G42	A-B	AB05	33	0.40	AB05
036	4tzv_B_G42_G43	miB	BB15	32	0.29	BB15
037	4tzv_B_G43_G44	NAN	NANT	0	0.41	BB10
038	4tzv_B_G44_G45	NAN	NANT	0	0.92	BB00
039	4tzv_B_C47_G48	NAN	NANT	0	1.94	OP06
040	4tzv_B_G48_C49	AAA	AA04	71	0.35	AA04
041	4tzv_B_C49_G50	AAA	AA00	63	0.18	AA00
042	4tzv_B_G50_G51	AAw	AA06	37	0.30	AA06
043	4tzv_B_G51_G52	AAA	AA08	43	0.37	AA08
044	4tzv_B_G52_U53	AAA	AA08	72	0.24	AA08
045	4tzv_B_U53_U54	AAA	AA04	41	0.54	AA04
046	4tzv_B_U54_C55	OPN	OP03	27	0.32	OP03
047	4tzv_B_C55_G56	AAA	AA08	93	0.33	AA08
048	4tzv_B_G56_A57	ICL	IC01	81	0.33	IC01
049	4tzv_B_A57_A58	NAN	NANT	0	0.37	OP25
050	4tzv_B_A58_U59	NAN	NANT	0	0.46	AB05
051	4tzv_B_U59_C60	OPN	OP12	46	0.40	OP12
052	4tzv_B_C60_C61	AAA	AA00	62	0.28	AA00
053	4tzv_B_C61_C62	AAA	AA00	46	0.22	AA00
054	4tzv_B_C62_G63	AAA	AA00	72	0.20	AA00
055	4tzv_B_G63_U64	AAA	AA00	69	0.22	AA00
056	4tzv_B_U64_C65	AAA	AA03	65	0.25	AA03
057	4tzv_B_C65_U66	AAA	AA00	87	0.17	AA00
058	4tzv_B_U66_C67	AAA	AA00	75	0.26	AA00
059	4tzv_B_C67_G68	AAA	AA00	31	0.31	AA00
060	4tzv_B_G68_G69	AAA	AA03	45	0.31	AA03
061	4tzv_B_G69_G70	AAA	AA08	67	0.35	AA08
062	4tzv_B_G70_C71	AAA	AA00	12	0.38	AA00
063	4tzv_B_C71_G72	AAA	AA00	80	0.28	AA00
064	4tzv_B_G72_A73	OPN	OP04	18	0.33	OP04
065	4tzv_B_A73_A74	AAA	AA08	39	0.38	AA08
066	4tzv_B_A74_A75	AAA	AA00	23	0.36	AA00
067	4tzv_B_A75_G76	AAw	AA05	77	0.30	AA05
068	4tzv_B_G76_C77	AAA	AA08	49	0.31	AA08
069	4tzv_B_C77_C78	AAA	AA04	69	0.31	AA04
070	4tzv_B_C78_C79	AAA	AA00	61	0.18	AA00
071	4tzv_C_G1_G2	AAA	AA00	38	0.40	AA00
072	4tzv_C_G2_G3	AAA	AA00	24	0.46	AA00
073	4tzv_C_G3_U4	AAw	AA01	53	0.30	AA01
074	4tzv_C_U4_G5	AAA	AA00	47	0.27	AA00
075	4tzv_C_G5_C6	AAA	AA08	80	0.21	AA08
076	4tzv_C_C6_G7	AAA	AA00	70	0.18	AA00
077	4tzv_C_G7_A8	NAN	NANT	0	1.10	BB2S
078	4tzv_C_A8_U9	NAN	NANT	0	0.58	OP21
079	4tzv_C_U9_G10	NAN	NANT	0	0.99	OP20
080	4tzv_C_G10_A11	NAN	NANT	0	0.34	OP10
081	4tzv_C_A11_G12	AAA	AA08	42	0.51	AA08
082	4tzv_C_G12_A13	AAA	AA04	79	0.25	AA04
083	4tzv_C_A13_A14	AAA	AA08	84	0.19	AA08
084	4tzv_C_A14_G15	AAA	AA00	71	0.16	AA00
085	4tzv_C_G15_A16	AAA	AA08	64	0.34	AA08
086	4tzv_C_A16_A17	NAN	NANT	0	0.69	AB2S
087	4tzv_C_A17_G18	NAN	NANT	0	0.60	AAS1
088	4tzv_C_G18_A19	ZZZ	ZZ01	55	0.33	ZZ01
089	4tzv_C_A19_G20	NAN	NANT	0	1.42	BB08
090	4tzv_C_G20_U21	OPN	OP15	57	0.32	OP15
091	4tzv_C_U21_A22	AAA	AA00	32	0.34	AA00
092	4tzv_C_A22_U23	AAA	AA04	26	0.63	AA04
093	4tzv_C_U23_U24	AAA	AA00	33	0.37	AA00
094	4tzv_C_U24_A25	AAw	AA01	21	0.37	AA01
095	4tzv_C_A25_A26	NAN	NANT	0	0.55	AA04
096	4tzv_C_A26_G27	NAN	NANT	0	0.57	AA10
097	4tzv_C_G27_G28	AAA	AA08	69	0.25	AA08
098	4tzv_C_G28_A29	AAA	AA08	84	0.27	AA08
099	4tzv_C_A29_U30	NAN	NANT	0	0.45	AB05
100	4tzv_C_U30_U31	NAN	NANT	0	1.22	OP27
101	4tzv_C_U31_U32	NAN	NANT	0	0.54	AA10
102	4tzv_C_U32_A33	AAw	AA11	68	0.35	AA11
103	4tzv_C_A33_C34	AAA	AA08	27	0.35	AA08
104	4tzv_C_C34_U35	NAN	NANT	0	0.48	AA08
105	4tzv_C_U35_A36	AAA	AA08	60	0.24	AA08
106	4tzv_C_A36_U37	AAA	AA08	88	0.26	AA08
107	4tzv_C_U37_G38	NAN	NANT	0	0.51	AB2S
108	4tzv_C_G38_A39	NAN	NANT	0	1.09	OP16
109	4tzv_C_A39_U40	AAA	AA00	47	0.40	AA00
110	4tzv_C_U40_U41	AAA	AA08	75	0.29	AA08
111	4tzv_C_U41_A42	NAN	NANT	0	0.56	BB2S
112	4tzv_C_A42_G43	NAN	NANT	0	0.78	AAS1
113	4tzv_C_G43_C44	OPN	OP03	75	0.19	OP03
114	4tzv_C_C44_G45	AAA	AA00	18	0.42	AA00
115	4tzv_C_G45_A46	ICL	IC01	75	0.28	IC01
116	4tzv_C_A46_C47	NAN	NANT	0	0.57	OP14
117	4tzv_C_C47_U48	AAA	AA00	66	0.26	AA00
118	4tzv_C_U48_C49	AAA	AA00	64	0.21	AA00
119	4tzv_C_C49_U50	AAA	AA00	82	0.20	AA00
120	4tzv_C_U50_A51	AAA	AA03	45	0.23	AA03
121	4tzv_C_A51_G52	AAw	AA11	75	0.18	AA11
122	4tzv_C_G52_G53	AAw	AA11	59	0.49	AA11
123	4tzv_C_G53_A54	NAN	NANT	0	0.82	AA03
124	4tzv_C_A54_U55	NAN	NANT	0	0.58	BB02
125	4tzv_C_U55_A56	NAN	NANT	0	1.04	OP04
126	4tzv_C_A56_G57	AAA	AA00	53	0.27	AA00
127	4tzv_C_G57_U58	AAA	AA00	65	0.27	AA00
128	4tzv_C_U58_G59	AAw	AA05	13	0.55	AA05
129	4tzv_C_G59_A60	OPN	OP04	10	0.20	OP04
130	4tzv_C_A60_A61	AAA	AA08	20	0.40	AA08
131	4tzv_C_A61_A62	NAN	NANT	0	0.57	IC04
132	4tzv_C_A62_G63	NAN	NANT	0	0.54	IC06
133	4tzv_C_G63_C64	NAN	NANT	0	0.49	OP11
134	4tzv_C_C64_U65	AAA	AA08	84	0.22	AA08
135	4tzv_C_U65_A66	AAA	AA00	56	0.28	AA00
136	4tzv_C_A66_G67	AAw	AA01	71	0.26	AA01
137	4tzv_C_G67_A68	AAA	AA08	77	0.20	AA08
138	4tzv_C_A68_G69	AAA	AA08	64	0.29	AA08
139	4tzv_C_G69_G70	AAw	AA10	13	0.51	AA10
140	4tzv_C_G70_A71	AAw	AA11	54	0.42	AA11
141	4tzv_C_A71_U72	NAN	NANT	0	0.71	AA12
142	4tzv_C_U72_A73	AAw	AA06	40	0.33	AA06
143	4tzv_C_A73_G74	AAA	AA08	62	0.27	AA08
144	4tzv_C_G74_U75	AAw	AA06	71	0.29	AA06
145	4tzv_C_U75_A76	AAw	AA11	65	0.42	AA11
146	4tzv_C_A76_A77	AAA	AA08	11	0.42	AA08
147	4tzv_C_A77_C78	AAu	AA12	37	0.57	AA12
148	4tzv_C_C78_C79	AAw	AA01	64	0.21	AA01
149	4tzv_C_C79_U80	AAA	AA08	53	0.33	AA08
150	4tzv_C_U80_U81	AAA	AA08	66	0.29	AA08
151	4tzv_C_U81_A82	AAA	AA08	68	0.27	AA08
152	4tzv_C_A82_A83	AAw	AA06	51	0.33	AA06
153	4tzv_C_A83_G84	AAA	AA08	71	0.38	AA08
154	4tzv_C_G84_A85	NAN	NANT	0	0.44	OP08
155	4tzv_C_A85_A86	AAA	AA03	21	0.47	AA03
156	4tzv_C_A86_G87	AAu	AA07	67	0.56	AA07
157	4tzv_C_G87_G88	AAA	AA00	60	0.35	AA00
158	4tzv_C_G88_C89	AAA	AA00	73	0.20	AA00
159	4tzv_C_C89_A90	AAA	AA08	55	0.39	AA08
160	4tzv_C_A90_C91	NAN	NANT	0	0.62	AA12
161	4tzv_C_C91_U92	NAN	NANT	0	0.39	AA03
162	4tzv_C_U92_U93	NAN	NANT	0	0.47	AA06
163	4tzv_C_U93_C94	AAA	AA08	84	0.18	AA08
164	4tzv_C_C94_G95	A-B	AB05	56	0.54	AB05
165	4tzv_C_G95_A96	NAN	NANT	0	0.97	OP22
166	4tzv_C_A96_G97	OPN	OP24	42	0.40	OP24
167	4tzv_C_G97_C98	AAA	AA00	83	0.20	AA00
168	4tzv_C_C98_A99	AAA	AA08	83	0.26	AA08
169	4tzv_C_A99_C100	AAA	AA08	61	0.35	AA08
170	4tzv_C_C100_C101	AAA	AA00	57	0.29	AA00
171	4tzv_C_C101_C102	NAN	NANT	0	0.46	AB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 171 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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