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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of the E. coli CRISPR RNA-guided surveillance complex, Cascade

Results of the assignment of 115 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0014tvx_L_A1_U2NANNANT00.49 OP28
0024tvx_L_U2_A3NANNANT01.23 OP17
0034tvx_L_A3_A4NANNANT01.61 OPS1
0044tvx_L_A4_A5AAAAA00640.32 AA00
0054tvx_L_A5_C6AAAAA09550.25 AA09
0064tvx_L_C6_C7NANNANT00.65 AB05
0074tvx_L_C7_G8NANNANT01.17 OP17
0084tvx_L_G8_A9NANNANT01.42 IC04
0094tvx_L_A9_C10B-ABA13210.39 BA13
0104tvx_L_C10_G11AAAAA09390.32 AA09
0114tvx_L_G11_G12NANNANT00.42 AA09
0124tvx_L_G12_U13NANNANT00.58 AA02
0134tvx_L_U13_A14NANNANT00.90 OP14
0144tvx_L_A14_U15NANNANT01.40 IC04
0154tvx_L_U15_U16B-ABA13120.34 BA13
0164tvx_L_U16_G17AAAAA09250.27 AA09
0174tvx_L_G17_U18NANNANT00.46 AA12
0184tvx_L_U18_U19A-BAB05570.30 AB05
0194tvx_L_U19_C20NANNANT01.46 OP17
0204tvx_L_C20_A21NANNANT01.44 IC04
0214tvx_L_A21_G22B-ABA13120.36 BA13
0224tvx_L_G22_A23AAAAA09440.33 AA09
0234tvx_L_A23_U24NANNANT00.52 AA12
0244tvx_L_U24_C25NANNANT00.37 AB01
0254tvx_L_C25_C26NANNANT00.96 OP14
0264tvx_L_C26_U27NANNANT01.33 IC04
0274tvx_L_U27_G28B-ABA16400.25 BA16
0284tvx_L_G28_G29AAAAA09380.26 AA09
0294tvx_L_G29_C30NANNANT00.47 AA12
0304tvx_L_C30_U31NANNANT00.63 IC04
0314tvx_L_U31_U32NANNANT00.92 OP14
0324tvx_L_U32_G33NANNANT01.36 IC04
0334tvx_L_G33_C34B-ABA1690.52 BA16
0344tvx_L_C34_C35AAAAA02270.39 AA02
0354tvx_L_C35_A36NANNANT00.66 AA12
0364tvx_L_A36_A37NANNANT00.62 AB03
0374tvx_L_A37_C38NANNANT01.02 OP14
0384tvx_L_C38_A39NANNANT01.39 IC04
0394tvx_L_A39_G40NANNANT00.95 AB1S
0404tvx_L_G40_G41NANNANT01.22 ZZS1
0414tvx_L_G41_A42NANNANT00.64 AA03
0424tvx_L_A42_G43NANNANT02.68 OP01
0434tvx_L_G43_U44NANNANT00.88 OPS1
0444tvx_L_U44_U45OPNOP18130.61 OP18
0454tvx_L_U45_C46OPNOP26420.46 OP26
0464tvx_L_C46_C47NANNANT00.55 AA01
0474tvx_L_C47_C48AAwAA01580.29 AA01
0484tvx_L_C48_C49NANNANT00.46 AA10
0494tvx_L_C49_G50NANNANT00.48 AA08
0504tvx_L_G50_C51NANNANT00.72 AA03
0514tvx_L_C51_G52NANNANT00.67 AA10
0524tvx_L_G52_C53NANNANT01.50 IC07
0534tvx_L_C53_C54NANNANT00.61 OP28
0544tvx_L_C54_A55NANNANT01.50 ZZ02
0554tvx_L_A55_G56NANNANT00.68 AA10
0564tvx_L_G56_C57AAAAA00510.32 AA00
0574tvx_L_C57_G58NANNANT00.48 AA11
0584tvx_L_G58_G59AAAAA03780.28 AA03
0594tvx_L_G59_G60AAwAA01820.26 AA01
0604tvx_X_A1_U2NANNANT00.51 OP28
0614tvx_X_U2_A3NANNANT01.25 OP17
0624tvx_X_A3_A4NANNANT01.60 OPS1
0634tvx_X_A4_A5AAAAA00750.29 AA00
0644tvx_X_A5_C6AAAAA09560.24 AA09
0654tvx_X_C6_C7NANNANT00.69 AB05
0664tvx_X_C7_G8NANNANT01.15 OP17
0674tvx_X_G8_A9NANNANT01.40 IC04
0684tvx_X_A9_C10B-ABA13410.32 BA13
0694tvx_X_C10_G11AAAAA09410.34 AA09
0704tvx_X_G11_G12NANNANT00.42 AA09
0714tvx_X_G12_U13NANNANT00.53 AB01
0724tvx_X_U13_A14NANNANT00.89 OP14
0734tvx_X_A14_U15NANNANT01.35 IC04
0744tvx_X_U15_U16B-ABA13130.38 BA13
0754tvx_X_U16_G17AAAAA09290.23 AA09
0764tvx_X_G17_U18NANNANT00.44 AA12
0774tvx_X_U18_U19A-BAB05560.36 AB05
0784tvx_X_U19_C20NANNANT01.45 OP17
0794tvx_X_C20_A21NANNANT01.40 IC04
0804tvx_X_A21_G22B-ABA13150.28 BA13
0814tvx_X_G22_A23AAAAA09360.34 AA09
0824tvx_X_A23_U24NANNANT00.45 AA12
0834tvx_X_U24_C25A-BAB05370.37 AB05
0844tvx_X_C25_C26NANNANT00.99 OP14
0854tvx_X_C26_U27NANNANT01.29 IC03
0864tvx_X_U27_G28B-ABA16400.25 BA16
0874tvx_X_G28_G29AAAAA09380.29 AA09
0884tvx_X_G29_C30NANNANT00.48 AA12
0894tvx_X_C30_U31NANNANT00.69 IC04
0904tvx_X_U31_U32NANNANT00.91 OP14
0914tvx_X_U32_G33NANNANT01.10 BB12
0924tvx_X_G33_C34NANNANT00.59 BB2S
0934tvx_X_C34_C35NANNANT00.39 AAS1
0944tvx_X_C35_A36NANNANT00.56 AA09
0954tvx_X_A36_A37NANNANT00.42 AB05
0964tvx_X_A37_C38NANNANT00.80 OP13
0974tvx_X_C38_A39NANNANT00.71 OP17
0984tvx_X_A39_G40NANNANT01.16 BB2S
0994tvx_X_G40_G41NANNANT00.55 AAS1
1004tvx_X_G41_A42NANNANT00.59 AAS1
1014tvx_X_A42_G43NANNANT00.91 OP17
1024tvx_X_G43_U44NANNANT00.64 IC03
1034tvx_X_U44_U45OPNOP18170.64 OP18
1044tvx_X_U45_C46OPNOP26600.39 OP26
1054tvx_X_C46_C47AAAAA03330.44 AA03
1064tvx_X_C47_C48AAwAA01570.34 AA01
1074tvx_X_C48_C49NANNANT00.44 AA10
1084tvx_X_C49_G50NANNANT00.48 AA08
1094tvx_X_G50_C51NANNANT00.56 AA03
1104tvx_X_C51_G52NANNANT00.51 AA10
1114tvx_X_A55_G56NANNANT00.66 AA10
1124tvx_X_G56_C57AAAAA00570.21 AA00
1134tvx_X_C57_G58NANNANT00.43 AA11
1144tvx_X_G58_G59AAAAA03750.36 AA03
1154tvx_X_G59_G60AAwAA01870.25 AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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