Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of MjMre11-DNA2 complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4tug_G_DG1_DC2 | NAN | NANT | 0 | 0.77 |
| 02 | 4tug_G_DC2_DA3 | AAA | AA02 | 12 | 0.41 |
| 03 | 4tug_G_DA3_DC4 | BBB | BB01 | 10 | 0.21 |
| 04 | 4tug_G_DC4_DG5 | A-B | AB03 | 59 | 0.24 |
| 05 | 4tug_G_DG5_DT6 | BBB | BB01 | 35 | 0.28 |
| 06 | 4tug_G_DT6_DA7 | BBB | BB00 | 28 | 0.24 |
| 07 | 4tug_G_DA7_DG8 | BBB | BB00 | 90 | 0.18 |
| 08 | 4tug_G_DG8_DG9 | B12 | BB04 | 30 | 0.17 |
| 09 | 4tug_G_DG9_DA10 | BBB | BB00 | 66 | 0.20 |
| 10 | 4tug_G_DA10_DC11 | miB | BB10 | 45 | 0.33 |
| 11 | 4tug_G_DC11_DA12 | B12 | BB04 | 40 | 0.34 |
| 12 | 4tug_G_DA12_DG13 | NAN | NANT | 0 | 1.29 |
| 13 | 4tug_G_DG13_DC14 | NAN | NANT | 0 | 1.04 |
| 14 | 4tug_H_DC15_DT16 | NAN | NANT | 0 | 0.82 |
| 15 | 4tug_H_DT16_DG17 | B-A | BA01 | 46 | 0.40 |
| 16 | 4tug_H_DG17_DT18 | AAA | AA02 | 57 | 0.43 |
| 17 | 4tug_H_DT18_DC19 | NAN | NANT | 0 | 0.51 |
| 18 | 4tug_H_DC19_DC20 | AAA | AA02 | 37 | 0.36 |
| 19 | 4tug_H_DC20_DT21 | A-B | AB03 | 73 | 0.23 |
| 20 | 4tug_H_DT21_DA22 | BBB | BB00 | 52 | 0.24 |
| 21 | 4tug_H_DA22_DC23 | BBB | BB00 | 88 | 0.15 |
| 22 | 4tug_H_DC23_DG24 | B12 | BB04 | 47 | 0.24 |
| 23 | 4tug_H_DG24_DT25 | BBB | BB00 | 58 | 0.30 |
| 24 | 4tug_H_DT25_DG26 | B12 | BB04 | 25 | 0.29 |
| 25 | 4tug_H_DG26_DC27 | B12 | BB04 | 44 | 0.28 |
| 26 | 4tug_H_DC27_DC28 | NAN | NANT | 0 | 0.55 |
| 27 | 4tug_H_DC28_DA29 | NAN | NANT | 0 | 0.67 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|