Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of the human mineralocorticoid receptor in complex with DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 32 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4tnt_C_DC1_DA2 | BBB | BB00 | 72 | 0.30 |
| 02 | 4tnt_C_DA2_DG3 | BBB | BB01 | 95 | 0.14 |
| 03 | 4tnt_C_DG3_DA4 | BBB | BB00 | 60 | 0.26 |
| 04 | 4tnt_C_DA4_DA5 | BBB | BB00 | 61 | 0.12 |
| 05 | 4tnt_C_DA5_DC6 | B-A | BA01 | 14 | 0.30 |
| 06 | 4tnt_C_DC6_DA7 | A-B | AB01 | 82 | 0.27 |
| 07 | 4tnt_C_DA7_DC8 | BBB | BB00 | 47 | 0.26 |
| 08 | 4tnt_C_DC8_DT9 | miB | BB15 | 40 | 0.35 |
| 09 | 4tnt_C_DT9_DC10 | B-A | BA01 | 19 | 0.47 |
| 10 | 4tnt_C_DC10_DT11 | B-A | BA05 | 46 | 0.47 |
| 11 | 4tnt_C_DT11_DG12 | BBB | BB00 | 41 | 0.27 |
| 12 | 4tnt_C_DG12_DT13 | miB | BB10 | 27 | 0.40 |
| 13 | 4tnt_C_DT13_DT14 | BBB | BB00 | 34 | 0.19 |
| 14 | 4tnt_C_DT14_DC15 | miB | BB15 | 78 | 0.20 |
| 15 | 4tnt_C_DC15_DT16 | B-A | BA01 | 11 | 0.33 |
| 16 | 4tnt_C_DT16_DG17 | NAN | NANT | 0 | 0.42 |
| 17 | 4tnt_D_DC1_DA2 | NAN | NANT | 0 | 0.56 |
| 18 | 4tnt_D_DA2_DG3 | BBB | BB00 | 80 | 0.17 |
| 19 | 4tnt_D_DG3_DA4 | BBB | BB00 | 73 | 0.30 |
| 20 | 4tnt_D_DA4_DA5 | BBB | BB00 | 73 | 0.25 |
| 21 | 4tnt_D_DA5_DC6 | B12 | BB04 | 33 | 0.25 |
| 22 | 4tnt_D_DC6_DA7 | BBB | BB00 | 47 | 0.16 |
| 23 | 4tnt_D_DA7_DG8 | B-A | BA01 | 25 | 0.14 |
| 24 | 4tnt_D_DG8_DA9 | A-B | AB03 | 69 | 0.49 |
| 25 | 4tnt_D_DA9_DG10 | BBB | BB00 | 75 | 0.23 |
| 26 | 4tnt_D_DG10_DT11 | B-A | BA05 | 53 | 0.30 |
| 27 | 4tnt_D_DT11_DG12 | A-B | AB03 | 86 | 0.32 |
| 28 | 4tnt_D_DG12_DT13 | BBB | BB00 | 63 | 0.26 |
| 29 | 4tnt_D_DT13_DT14 | BBB | BB00 | 65 | 0.16 |
| 30 | 4tnt_D_DT14_DC15 | BBB | BB00 | 64 | 0.24 |
| 31 | 4tnt_D_DC15_DT16 | miB | BB10 | 82 | 0.22 |
| 32 | 4tnt_D_DT16_DG17 | miB | BB13 | 69 | 0.29 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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