DNATCO v4.1: results

FURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE

Results of the assignment of 71 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	4tna_A_G1_C2	AAA	AA00	64	0.20	AA00
02	4tna_A_C2_G3	AAA	AA08	74	0.26	AA08
03	4tna_A_G3_G4	AAA	AA00	75	0.23	AA00
04	4tna_A_G4_A5	AAA	AA00	81	0.18	AA00
05	4tna_A_A5_U6	AAA	AA00	82	0.20	AA00
06	4tna_A_U6_U7	A-B	AB05	77	0.20	AB05
07	4tna_A_U7_U8	OPN	OP11	58	0.35	OP11
08	4tna_A_U8_A9	NAN	NANT	0	0.94	IC02
09	4tna_A_A9_2MG10	NAN	NANT	0	1.12	OP26
10	4tna_A_2MG10_C11	AAA	AA00	48	0.27	AA00
11	4tna_A_C11_U12	AAA	AA04	73	0.28	AA04
12	4tna_A_U12_C13	AAA	AA04	83	0.38	AA04
13	4tna_A_C13_A14	AAu	AA12	47	0.43	AA12
14	4tna_A_A14_G15	AAA	AA08	50	0.41	AA08
15	4tna_A_G15_H2U16	NAN	NANT	0	1.10	IC03
16	4tna_A_H2U16_H2U17	NAN	NANT	0	0.66	OP18
17	4tna_A_H2U17_G18	NAN	NANT	0	1.29	OP09
18	4tna_A_G18_G19	NAN	NANT	0	0.39	IC05
19	4tna_A_G19_G20	NAN	NANT	0	0.56	OP11
20	4tna_A_G20_A21	NAN	NANT	0	1.15	IC03
21	4tna_A_A21_G22	NAN	NANT	0	0.88	OP15
22	4tna_A_G22_A23	AAu	AA12	43	0.23	AA12
23	4tna_A_A23_G24	AAA	AA00	87	0.17	AA00
24	4tna_A_G24_C25	AAA	AA00	67	0.23	AA00
25	4tna_A_C25_M2G26	AAA	AA00	42	0.51	AA00
26	4tna_A_M2G26_C27	AAA	AA00	75	0.29	AA00
27	4tna_A_C27_C28	AAA	AA00	61	0.34	AA00
28	4tna_A_C28_A29	AAA	AA00	64	0.20	AA00
29	4tna_A_A29_G30	AAA	AA00	45	0.31	AA00
30	4tna_A_G30_A31	AAA	AA00	74	0.41	AA00
31	4tna_A_A31_OMC32	AAA	AA08	41	0.43	AA08
32	4tna_A_OMC32_U33	AAA	AA00	88	0.27	AA00
33	4tna_A_U33_OMG34	OPN	OP03	10	0.26	OP03
34	4tna_A_OMG34_A35	AAA	AA08	67	0.35	AA08
35	4tna_A_A35_A36	AAA	AA08	29	0.49	AA08
36	4tna_A_A36_YG37	AAw	AA01	22	0.41	AA01
37	4tna_A_YG37_A38	AAA	AA08	62	0.32	AA08
38	4tna_A_5MC40_U41	AAA	AA00	73	0.35	AA00
39	4tna_A_U41_G42	AAA	AA00	88	0.20	AA00
40	4tna_A_G42_G43	AAA	AA00	72	0.20	AA00
41	4tna_A_G43_A44	AAA	AA00	74	0.22	AA00
42	4tna_A_A44_G45	AAA	AA00	54	0.48	AA00
43	4tna_A_G45_7MG46	NAN	NANT	0	0.59	IC03
44	4tna_A_7MG46_U47	NAN	NANT	0	0.94	OP17
45	4tna_A_U47_C48	NAN	NANT	0	1.18	OP06
46	4tna_A_C48_5MC49	NAN	NANT	0	1.57	OP06
47	4tna_A_5MC49_U50	AAA	AA00	65	0.28	AA00
48	4tna_A_U50_G51	AAA	AA00	75	0.13	AA00
49	4tna_A_G51_U52	AAA	AA00	67	0.17	AA00
50	4tna_A_U52_G53	AAA	AA04	86	0.26	AA04
51	4tna_A_G53_5MU54	AAA	AA00	36	0.29	AA00
52	4tna_A_C56_G57	AAA	AA04	74	0.34	AA04
53	4tna_A_G57_1MA58	ICL	IC03	16	0.47	IC03
54	4tna_A_1MA58_U59	NAN	NANT	0	0.51	OP25
55	4tna_A_U59_C60	A-B	AB05	67	0.44	AB05
56	4tna_A_C60_C61	OPN	OP12	88	0.20	OP12
57	4tna_A_C61_A62	AAA	AA00	83	0.13	AA00
58	4tna_A_A62_C63	AAA	AA00	88	0.14	AA00
59	4tna_A_C63_A64	AAA	AA00	93	0.15	AA00
60	4tna_A_A64_G65	AAA	AA00	69	0.19	AA00
61	4tna_A_G65_A66	AAA	AA04	82	0.18	AA04
62	4tna_A_A66_A67	AAA	AA00	72	0.19	AA00
63	4tna_A_A67_U68	AAA	AA00	72	0.14	AA00
64	4tna_A_U68_U69	AAA	AA00	71	0.22	AA00
65	4tna_A_U69_C70	AAA	AA00	86	0.20	AA00
66	4tna_A_C70_G71	AAA	AA04	90	0.19	AA04
67	4tna_A_G71_C72	AAA	AA00	68	0.32	AA00
68	4tna_A_C72_A73	AAA	AA00	87	0.21	AA00
69	4tna_A_A73_C74	AAA	AA00	38	0.38	AA00
70	4tna_A_C74_C75	AAA	AA00	34	0.33	AA00
71	4tna_A_C75_A76	NAN	NANT	0	0.58	OP30

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 71 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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