Conformers:
ABBIImiBZICOPNSYNN
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Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with SAH and with DNA Containing Distal Pap Regulon Sequence
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4rtk_F_DT1_DC2 | NAN | NANT | 0 | 0.59 |
| 02 | 4rtk_F_DC2_DT3 | A-B | AB01 | 54 | 0.35 |
| 03 | 4rtk_F_DT3_DA4 | BB2 | BB07 | 72 | 0.28 |
| 04 | 4rtk_F_DA4_DA5 | BBB | BB00 | 88 | 0.13 |
| 05 | 4rtk_F_DA5_DA6 | BBB | BB00 | 75 | 0.22 |
| 06 | 4rtk_F_DA6_DG7 | BBB | BB01 | 70 | 0.16 |
| 07 | 4rtk_F_DG7_DA8 | BBB | BB00 | 81 | 0.21 |
| 08 | 4rtk_F_DA8_DT9 | BBB | BB01 | 31 | 0.31 |
| 09 | 4rtk_F_DT9_DC10 | AAA | AA02 | 49 | 0.43 |
| 10 | 4rtk_F_DC10_DG11 | AAA | AA02 | 79 | 0.25 |
| 11 | 4rtk_G_DA1_DC2 | NAN | NANT | 0 | 0.71 |
| 12 | 4rtk_G_DC2_DG3 | BBB | BB00 | 85 | 0.22 |
| 13 | 4rtk_G_DG3_DA4 | BBB | BB00 | 84 | 0.24 |
| 14 | 4rtk_G_DA4_DT5 | BBB | BB00 | 64 | 0.19 |
| 15 | 4rtk_G_DT5_DC6 | NAN | NANT | 0 | 0.51 |
| 16 | 4rtk_G_DC6_DT7 | BBB | BB01 | 49 | 0.40 |
| 17 | 4rtk_G_DT7_DT8 | BBB | BB01 | 83 | 0.16 |
| 18 | 4rtk_G_DT8_DT9 | BBB | BB00 | 81 | 0.20 |
| 19 | 4rtk_G_DT9_DA10 | BBB | BB00 | 81 | 0.32 |
| 20 | 4rtk_G_DA10_DG11 | B12 | BB04 | 63 | 0.40 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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