Conformers:
ABBIImiBZICOPNSYNN
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FAN1 Nuclease bound to 5' phosphorylated p(dT) single flap DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 72 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4rib_X_DT0_DA1 | NAN | NANT | 0 | 1.34 |
| 02 | 4rib_X_DA1_DG2 | miB | BB15 | 17 | 0.34 |
| 03 | 4rib_X_DG2_DC3 | BBB | BB01 | 68 | 0.21 |
| 04 | 4rib_X_DC3_DC4 | BBB | BB01 | 40 | 0.31 |
| 05 | 4rib_X_DC4_DA5 | NAN | NANT | 0 | 0.47 |
| 06 | 4rib_X_DA5_DC6 | miB | BB15 | 47 | 0.23 |
| 07 | 4rib_X_DC6_DG7 | BBB | BB00 | 79 | 0.20 |
| 08 | 4rib_X_DG7_DC8 | B12 | BB04 | 67 | 0.19 |
| 09 | 4rib_X_DC8_DC9 | BBB | BB00 | 47 | 0.29 |
| 10 | 4rib_X_DC9_DT10 | miB | BB10 | 55 | 0.26 |
| 11 | 4rib_X_DT10_DA11 | BB2 | BB07 | 49 | 0.21 |
| 12 | 4rib_X_DA11_DG12 | B12 | BB04 | 13 | 0.40 |
| 13 | 4rib_X_DG12_DA13 | miB | BB10 | 15 | 0.35 |
| 14 | 4rib_X_DA13_DC14 | BBB | BB00 | 28 | 0.22 |
| 15 | 4rib_X_DC14_DT15 | miB | BB15 | 48 | 0.36 |
| 16 | 4rib_X_DT15_DC16 | BBB | BB00 | 48 | 0.19 |
| 17 | 4rib_X_DC16_DC17 | BBB | BB00 | 86 | 0.18 |
| 18 | 4rib_X_DC17_DT18 | B12 | BB04 | 45 | 0.32 |
| 19 | 4rib_X_DT18_DC19 | BBB | BB00 | 64 | 0.35 |
| 20 | 4rib_U_DT0_DA1 | NAN | NANT | 0 | 1.32 |
| 21 | 4rib_U_DA1_DG2 | B-A | BA05 | 75 | 0.18 |
| 22 | 4rib_U_DG2_DC3 | B-A | BA05 | 55 | 0.32 |
| 23 | 4rib_U_DC3_DC4 | BBB | BB01 | 39 | 0.32 |
| 24 | 4rib_U_DC4_DA5 | NAN | NANT | 0 | 0.47 |
| 25 | 4rib_U_DA5_DC6 | miB | BB15 | 46 | 0.24 |
| 26 | 4rib_U_DC6_DG7 | BBB | BB00 | 78 | 0.20 |
| 27 | 4rib_U_DG7_DC8 | B12 | BB04 | 71 | 0.19 |
| 28 | 4rib_U_DC8_DC9 | BBB | BB00 | 48 | 0.28 |
| 29 | 4rib_U_DC9_DT10 | miB | BB10 | 60 | 0.26 |
| 30 | 4rib_U_DT10_DA11 | BB2 | BB07 | 33 | 0.28 |
| 31 | 4rib_U_DA11_DG12 | miB | BB10 | 61 | 0.34 |
| 32 | 4rib_U_DG12_DA13 | miB | BB10 | 67 | 0.50 |
| 33 | 4rib_U_DA13_DC14 | miB | BB10 | 32 | 0.28 |
| 34 | 4rib_U_DC14_DT15 | miB | BB10 | 95 | 0.19 |
| 35 | 4rib_U_DT15_DC16 | B12 | BB04 | 44 | 0.24 |
| 36 | 4rib_U_DC16_DC17 | BBB | BB00 | 83 | 0.18 |
| 37 | 4rib_U_DC17_DT18 | B12 | BB04 | 29 | 0.32 |
| 38 | 4rib_U_DT18_DC19 | BBB | BB00 | 60 | 0.34 |
| 39 | 4rib_Y_DG1_DC2 | AAA | AA00 | 55 | 0.30 |
| 40 | 4rib_Y_DC2_DT3 | AAA | AA00 | 56 | 0.25 |
| 41 | 4rib_Y_DT3_DG4 | NAN | NANT | 0 | 0.97 |
| 42 | 4rib_Y_DG4_DA5 | miB | BB10 | 67 | 0.40 |
| 43 | 4rib_Y_DA5_DG6 | BBB | BB00 | 66 | 0.20 |
| 44 | 4rib_Y_DG6_DG7 | miB | BB10 | 57 | 0.34 |
| 45 | 4rib_Y_DG7_DA8 | miB | BB10 | 81 | 0.23 |
| 46 | 4rib_Y_DA8_DG9 | miB | BB15 | 44 | 0.29 |
| 47 | 4rib_Y_DG9_DT10 | BBB | BB00 | 80 | 0.32 |
| 48 | 4rib_Y_DT10_DC11 | BBB | BB00 | 58 | 0.16 |
| 49 | 4rib_Y_DC11_DT12 | BBB | BB00 | 70 | 0.31 |
| 50 | 4rib_V_DG1_DC2 | AAA | AA00 | 26 | 0.34 |
| 51 | 4rib_V_DC2_DT3 | NAN | NANT | 0 | 0.51 |
| 52 | 4rib_V_DT3_DG4 | NAN | NANT | 0 | 1.02 |
| 53 | 4rib_V_DG4_DA5 | miB | BB10 | 72 | 0.39 |
| 54 | 4rib_V_DA5_DG6 | BBB | BB00 | 83 | 0.18 |
| 55 | 4rib_V_DG6_DG7 | miB | BB10 | 64 | 0.33 |
| 56 | 4rib_V_DG7_DA8 | miB | BB10 | 79 | 0.24 |
| 57 | 4rib_V_DA8_DG9 | miB | BB15 | 37 | 0.30 |
| 58 | 4rib_V_DG9_DT10 | BBB | BB00 | 77 | 0.34 |
| 59 | 4rib_V_DT10_DC11 | BBB | BB00 | 33 | 0.19 |
| 60 | 4rib_V_DC11_DT12 | miB | BB10 | 20 | 0.39 |
| 61 | 4rib_Z_DA1_DG2 | miB | BB15 | 17 | 0.42 |
| 62 | 4rib_Z_DG2_DG3 | BB2 | BB07 | 66 | 0.33 |
| 63 | 4rib_Z_DG3_DC4 | B-A | BA05 | 51 | 0.10 |
| 64 | 4rib_Z_DC4_DG5 | A-B | AB01 | 14 | 0.26 |
| 65 | 4rib_Z_DG5_DT6 | BBB | BB00 | 17 | 0.19 |
| 66 | 4rib_Z_DT6_DG7 | B12 | BB04 | 34 | 0.23 |
| 67 | 4rib_W_DA1_DG2 | A-B | AB03 | 34 | 0.41 |
| 68 | 4rib_W_DG2_DG3 | BB2 | BB07 | 68 | 0.34 |
| 69 | 4rib_W_DG3_DC4 | B-A | BA01 | 44 | 0.28 |
| 70 | 4rib_W_DC4_DG5 | A-B | AB01 | 30 | 0.25 |
| 71 | 4rib_W_DG5_DT6 | BBB | BB00 | 25 | 0.20 |
| 72 | 4rib_W_DT6_DG7 | B12 | BB04 | 42 | 0.23 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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