DNATCO v4.1: results

Crystal structure of the in-line aligned env22 twister ribozyme soaked with Mn2+

Results of the assignment of 158 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	4rgf_A_U1_U2	NAN	NANT	0	0.70	OP05
002	4rgf_A_U2_U3	AAA	AA02	53	0.40	AA02
003	4rgf_A_U3_U4	NAN	NANT	0	1.93	OP10
004	4rgf_A_U4_DU5	NAN	NANT	0	1.18	OP17
005	4rgf_A_DU5_A6	NAN	NANT	0	2.21	BB2S
006	4rgf_A_A6_A7	OPN	OPS1	45	0.61	OPS1
007	4rgf_A_A7_U8	AAA	AA08	29	0.55	AA08
008	4rgf_A_U8_G9	AAA	AA00	13	0.39	AA00
009	4rgf_A_G9_A10	AAw	AA01	18	0.34	AA01
010	4rgf_A_A10_A11	AAA	AA08	63	0.30	AA08
011	4rgf_A_A11_G12	AAw	AA10	35	0.28	AA10
012	4rgf_A_G12_C13	AAA	AA08	88	0.17	AA08
013	4rgf_A_C13_C14	AAA	AA00	72	0.26	AA00
014	4rgf_A_C14_A15	AAA	AA00	66	0.21	AA00
015	4rgf_A_A15_C16	AAA	AA00	61	0.19	AA00
016	4rgf_A_C16_A17	AAA	AA00	70	0.19	AA00
017	4rgf_A_A17_G18	NAN	NANT	0	0.33	AA10
018	4rgf_A_C20_C21	AAA	AA00	44	0.26	AA00
019	4rgf_A_C21_U22	AAA	AA00	59	0.24	AA00
020	4rgf_A_U22_G23	AAA	AA08	90	0.17	AA08
021	4rgf_A_G23_U24	AAA	AA00	82	0.14	AA00
022	4rgf_A_U24_G25	AAw	AA10	19	0.37	AA10
023	4rgf_A_G25_A26	OPN	OP02	27	0.48	OP02
024	4rgf_A_A26_G27	AAA	AA04	68	0.48	AA04
025	4rgf_A_G27_G28	AAA	AA08	76	0.18	AA08
026	4rgf_A_G28_G29	AAA	AA00	77	0.19	AA00
027	4rgf_A_G29_U30	AAA	AA08	89	0.18	AA08
028	4rgf_A_U30_C31	OPN	OP05	61	0.24	OP05
029	4rgf_A_C31_C32	AAA	AA00	76	0.22	AA00
030	4rgf_A_C32_U33	AAA	AA04	91	0.20	AA04
031	4rgf_A_U33_A34	ZZZ	ZZ01	11	0.30	ZZ01
032	4rgf_A_A34_A35	NAN	NANT	0	0.51	OP16
033	4rgf_A_A35_G36	NAN	NANT	0	0.31	OP14
034	4rgf_A_G36_C37	AAA	AA08	42	0.25	AA08
035	4rgf_A_C37_C38	NAN	NANT	0	1.00	OP30
036	4rgf_A_C38_C39	AAA	AA00	38	0.34	AA00
037	4rgf_A_C39_C40	AAA	AA00	69	0.26	AA00
038	4rgf_A_C40_U41	ZZZ	ZZ01	77	0.15	ZZ01
039	4rgf_A_U41_A42	NAN	NANT	0	0.40	OP26
040	4rgf_A_A42_A43	AAA	AA09	43	0.26	AA09
041	4rgf_A_A43_U44	NAN	NANT	0	1.35	IC02
042	4rgf_A_U44_U45	B-A	BA16	76	0.34	BA16
043	4rgf_A_U45_C46	AAA	AA00	90	0.17	AA00
044	4rgf_A_C46_A47	AAw	AA01	64	0.21	AA01
045	4rgf_A_A47_G48	AAA	AA08	40	0.46	AA08
046	4rgf_A_G48_A49	NAN	NANT	0	0.85	AA11
047	4rgf_A_A49_A50	AAA	AA00	59	0.21	AA00
048	4rgf_A_A50_G51	AAA	AA03	83	0.17	AA03
049	4rgf_A_G51_G52	AAw	AA10	81	0.31	AA10
050	4rgf_A_G52_G53	AAA	AA03	79	0.29	AA03
051	4rgf_A_G53_A54	AAA	AA08	87	0.24	AA08
052	4rgf_A_A54_A55	AAA	AA08	80	0.21	AA08
053	4rgf_A_A55_A56	A-B	AB05	40	0.37	AB05
054	4rgf_B_U1_U2	NAN	NANT	0	0.71	OP05
055	4rgf_B_U2_U3	AAA	AA08	88	0.13	AA08
056	4rgf_B_U3_U4	NAN	NANT	0	0.45	OP31
057	4rgf_B_U4_DU5	NAN	NANT	0	1.18	OP17
058	4rgf_B_DU5_A6	NAN	NANT	0	2.25	BB2S
059	4rgf_B_A6_A7	NAN	NANT	0	0.77	OPS1
060	4rgf_B_A7_U8	NAN	NANT	0	0.73	AA08
061	4rgf_B_U8_G9	AAA	AA00	10	0.32	AA00
062	4rgf_B_G9_A10	AAw	AA06	77	0.21	AA06
063	4rgf_B_A10_A11	AAA	AA08	85	0.24	AA08
064	4rgf_B_A11_G12	AAw	AA10	72	0.21	AA10
065	4rgf_B_G12_C13	AAA	AA00	67	0.31	AA00
066	4rgf_B_C13_C14	AAA	AA00	84	0.19	AA00
067	4rgf_B_C14_A15	AAA	AA00	90	0.14	AA00
068	4rgf_B_A15_C16	AAA	AA00	77	0.26	AA00
069	4rgf_B_C16_A17	AAA	AA00	65	0.31	AA00
070	4rgf_B_A17_G18	AAA	AA00	87	0.17	AA00
071	4rgf_B_C20_C21	AAA	AA00	66	0.15	AA00
072	4rgf_B_C21_U22	AAA	AA00	70	0.10	AA00
073	4rgf_B_U22_G23	AAA	AA00	70	0.24	AA00
074	4rgf_B_G23_U24	AAA	AA08	83	0.20	AA08
075	4rgf_B_U24_G25	AAw	AA06	77	0.36	AA06
076	4rgf_B_G25_A26	NAN	NANT	0	0.57	OP02
077	4rgf_B_A26_G27	AAA	AA08	59	0.41	AA08
078	4rgf_B_G27_G28	AAA	AA00	75	0.19	AA00
079	4rgf_B_G28_G29	AAA	AA00	77	0.20	AA00
080	4rgf_B_G29_U30	AAA	AA00	73	0.26	AA00
081	4rgf_B_U30_C31	OPN	OP05	73	0.26	OP05
082	4rgf_B_C31_C32	AAA	AA00	46	0.30	AA00
083	4rgf_B_C32_U33	AAA	AA00	83	0.17	AA00
084	4rgf_B_U33_A34	ZZZ	ZZ01	91	0.20	ZZ01
085	4rgf_B_A34_A35	NAN	NANT	0	2.03	OP1S
086	4rgf_B_A35_G36	NAN	NANT	0	1.01	OP03
087	4rgf_B_G36_C37	NAN	NANT	0	0.52	AA06
088	4rgf_B_C37_C38	NAN	NANT	0	1.09	OP30
089	4rgf_B_C38_C39	AAw	AA01	53	0.36	AA01
090	4rgf_B_C39_C40	AAA	AA08	38	0.28	AA08
091	4rgf_B_C40_U41	ZZZ	ZZ01	43	0.19	ZZ01
092	4rgf_B_U41_A42	NAN	NANT	0	0.41	OP26
093	4rgf_B_A42_A43	AAA	AA08	13	0.47	AA08
094	4rgf_B_A43_U44	NAN	NANT	0	1.46	IC01
095	4rgf_B_U44_U45	B-A	BA16	53	0.22	BA16
096	4rgf_B_U45_C46	AAA	AA00	89	0.24	AA00
097	4rgf_B_C46_A47	NAN	NANT	0	0.35	AA10
098	4rgf_B_A47_G48	AAA	AA08	43	0.56	AA08
099	4rgf_B_G48_A49	NAN	NANT	0	1.06	AA11
100	4rgf_B_A49_A50	AAw	AA01	76	0.17	AA01
101	4rgf_B_A50_G51	AAA	AA08	55	0.29	AA08
102	4rgf_B_G51_G52	AAA	AA00	71	0.14	AA00
103	4rgf_B_G52_G53	AAA	AA00	77	0.25	AA00
104	4rgf_B_G53_A54	AAA	AA08	65	0.30	AA08
105	4rgf_B_A54_A55	AAA	AA00	39	0.23	AA00
106	4rgf_B_A55_A56	NAN	NANT	0	2.30	OP01
107	4rgf_C_U1_U2	NAN	NANT	0	2.13	OP06
108	4rgf_C_U2_U3	AAA	AA08	12	0.52	AA08
109	4rgf_C_U3_U4	NAN	NANT	0	0.42	OP31
110	4rgf_C_U4_DU5	NAN	NANT	0	1.17	OP17
111	4rgf_C_DU5_A6	NAN	NANT	0	2.09	BB1S
112	4rgf_C_A6_A7	NAN	NANT	0	0.63	OPS1
113	4rgf_C_A7_U8	AAA	AA08	50	0.61	AA08
114	4rgf_C_U8_G9	AAA	AA00	11	0.41	AA00
115	4rgf_C_G9_A10	AAw	AA01	21	0.38	AA01
116	4rgf_C_A10_A11	NAN	NANT	0	0.53	AA03
117	4rgf_C_A11_G12	AAw	AA10	45	0.41	AA10
118	4rgf_C_G12_C13	AAA	AA00	76	0.15	AA00
119	4rgf_C_C13_C14	AAw	AA01	48	0.43	AA01
120	4rgf_C_C14_A15	AAA	AA08	74	0.30	AA08
121	4rgf_C_A15_C16	AAA	AA08	69	0.33	AA08
122	4rgf_C_C16_A17	AAA	AA00	58	0.24	AA00
123	4rgf_C_A17_G18	AAA	AA00	82	0.15	AA00
124	4rgf_C_C20_C21	AAA	AA00	81	0.11	AA00
125	4rgf_C_C21_U22	AAA	AA00	44	0.32	AA00
126	4rgf_C_U22_G23	AAA	AA00	76	0.19	AA00
127	4rgf_C_G23_U24	AAA	AA08	84	0.17	AA08
128	4rgf_C_U24_G25	AAA	AA08	64	0.36	AA08
129	4rgf_C_G25_A26	NAN	NANT	0	0.68	OP02
130	4rgf_C_A26_G27	AAA	AA08	87	0.27	AA08
131	4rgf_C_G27_G28	AAA	AA00	64	0.23	AA00
132	4rgf_C_G28_G29	AAw	AA01	86	0.25	AA01
133	4rgf_C_G29_U30	AAA	AA08	36	0.49	AA08
134	4rgf_C_U30_C31	NAN	NANT	0	1.84	OP06
135	4rgf_C_C31_C32	AAA	AA08	13	0.41	AA08
136	4rgf_C_C32_U33	AAA	AA00	87	0.17	AA00
137	4rgf_C_U33_A34	ZZZ	ZZ01	45	0.20	ZZ01
138	4rgf_C_A34_A35	NAN	NANT	0	0.55	OP16
139	4rgf_C_A35_G36	NAN	NANT	0	0.88	OP25
140	4rgf_C_G36_C37	AAw	AA01	10	0.37	AA01
141	4rgf_C_C37_C38	NAN	NANT	0	1.15	OP30
142	4rgf_C_C38_C39	AAA	AA00	57	0.36	AA00
143	4rgf_C_C39_C40	AAA	AA00	53	0.21	AA00
144	4rgf_C_C40_U41	NAN	NANT	0	0.34	ZZ01
145	4rgf_C_U41_A42	NAN	NANT	0	0.68	OP15
146	4rgf_C_A42_A43	AAA	AA09	77	0.23	AA09
147	4rgf_C_A43_U44	NAN	NANT	0	1.47	IC01
148	4rgf_C_U44_U45	B-A	BA13	51	0.26	BA13
149	4rgf_C_U45_C46	AAA	AA00	75	0.20	AA00
150	4rgf_C_C46_A47	AAw	AA01	76	0.21	AA01
151	4rgf_C_A47_G48	AAA	AA08	61	0.46	AA08
152	4rgf_C_G48_A49	NAN	NANT	0	0.92	AA11
153	4rgf_C_A49_A50	NAN	NANT	0	0.69	AA01
154	4rgf_C_A50_G51	AAA	AA08	66	0.28	AA08
155	4rgf_C_G51_G52	AAA	AA08	83	0.19	AA08
156	4rgf_C_G52_G53	AAA	AA08	71	0.30	AA08
157	4rgf_C_G53_A54	AAA	AA08	78	0.36	AA08
158	4rgf_C_A54_A55	NAN	NANT	0	1.04	IC04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 158 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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