Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
A nuclease-DNA complex form 3
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 37 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4rec_B_DC11_DG12 | miB | BB13 | 65 | 0.41 |
| 02 | 4rec_B_DG12_DT13 | BBw | BB17 | 23 | 0.49 |
| 03 | 4rec_B_DT13_DT14 | miB | BB14 | 85 | 0.36 |
| 04 | 4rec_B_DT14_DG15 | BB2 | BB07 | 63 | 0.19 |
| 05 | 4rec_B_DG15_DC16 | miB | BB10 | 83 | 0.34 |
| 06 | 4rec_B_DC16_DT17 | NAN | NANT | 0 | 0.36 |
| 07 | 4rec_B_DT17_DA18 | miB | BB10 | 70 | 0.32 |
| 08 | 4rec_B_DA18_DC19 | miB | BB10 | 49 | 0.37 |
| 09 | 4rec_B_DC19_DG20 | miB | BB10 | 75 | 0.25 |
| 10 | 4rec_B_DC101_DG102 | miB | BB10 | 55 | 0.31 |
| 11 | 4rec_B_DG102_DT103 | BBB | BB00 | 85 | 0.24 |
| 12 | 4rec_B_DT103_DG104 | miB | BB10 | 81 | 0.36 |
| 13 | 4rec_B_DG104_DG105 | B12 | BB04 | 79 | 0.21 |
| 14 | 4rec_B_DG105_DC106 | miB | BB15 | 23 | 0.35 |
| 15 | 4rec_B_DC106_DG107 | BB2 | BB07 | 89 | 0.20 |
| 16 | 4rec_B_DG107_DA108 | BBB | BB00 | 73 | 0.14 |
| 17 | 4rec_B_DA108_DG109 | BBB | BB00 | 59 | 0.18 |
| 18 | 4rec_B_DG109_DC110 | miB | BB10 | 64 | 0.29 |
| 19 | 4rec_B_DC313_DG314 | NAN | NANT | 0 | 0.87 |
| 20 | 4rec_B_DG314_DT315 | BBB | BB00 | 28 | 0.33 |
| 21 | 4rec_B_DT315_DA316 | B12 | BB04 | 78 | 0.19 |
| 22 | 4rec_B_DA316_DG317 | BBB | BB00 | 25 | 0.27 |
| 23 | 4rec_B_DG317_DC318 | BBB | BB01 | 71 | 0.20 |
| 24 | 4rec_B_DC318_DA319 | miB | BB10 | 71 | 0.40 |
| 25 | 4rec_B_DA319_DA320 | BBB | BB00 | 25 | 0.29 |
| 26 | 4rec_B_DA320_DC321 | NAN | NANT | 0 | 0.42 |
| 27 | 4rec_B_DC321_DG322 | NAN | NANT | 0 | 0.42 |
| 28 | 4rec_B_DG322_DG323 | BBw | BB17 | 53 | 0.37 |
| 29 | 4rec_B_DG323_DC324 | NAN | NANT | 0 | 0.38 |
| 30 | 4rec_B_DC324_DT325 | miB | BB10 | 80 | 0.41 |
| 31 | 4rec_B_DT325_DC326 | BBB | BB00 | 28 | 0.46 |
| 32 | 4rec_B_DC326_DG327 | BBB | BB00 | 40 | 0.28 |
| 33 | 4rec_B_DG327_DC328 | miB | BB10 | 33 | 0.34 |
| 34 | 4rec_B_DC328_DC329 | BBB | BB00 | 80 | 0.20 |
| 35 | 4rec_B_DC329_DA330 | BBB | BB00 | 77 | 0.39 |
| 36 | 4rec_B_DA330_DC331 | BBB | BB00 | 67 | 0.28 |
| 37 | 4rec_B_DC331_DG332 | B12 | BB04 | 43 | 0.25 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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