Conformers:
ABBIImiBZICOPNSYNN
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Crystal structure of Magnetospirillum gryphiswaldense MSR-1 Fur-Mn2+-feoAB1 operator
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4rb3_A_DT1_DT2 | BBB | BB00 | 64 | 0.39 |
| 02 | 4rb3_A_DT2_DA3 | BB2 | BB07 | 62 | 0.23 |
| 03 | 4rb3_A_DA3_DA4 | B12 | BB04 | 78 | 0.13 |
| 04 | 4rb3_A_DA4_DT5 | BBB | BB00 | 85 | 0.19 |
| 05 | 4rb3_A_DT5_DT6 | BBB | BB00 | 69 | 0.17 |
| 06 | 4rb3_A_DT6_DG7 | BBB | BB00 | 57 | 0.28 |
| 07 | 4rb3_A_DG7_DC8 | B-A | BA01 | 47 | 0.17 |
| 08 | 4rb3_A_DC8_DA9 | NAN | NANT | 0 | 0.59 |
| 09 | 4rb3_A_DA9_DA10 | A-B | AB03 | 63 | 0.18 |
| 10 | 4rb3_A_DA10_DA11 | BBB | BB00 | 19 | 0.25 |
| 11 | 4rb3_A_DA11_DT12 | NAN | NANT | 0 | 0.44 |
| 12 | 4rb3_A_DT12_DC13 | BBw | BB02 | 41 | 0.52 |
| 13 | 4rb3_A_DC13_DA14 | BBB | BB00 | 11 | 0.35 |
| 14 | 4rb3_A_DA14_DT15 | BBB | BB01 | 71 | 0.17 |
| 15 | 4rb3_A_DT15_DT16 | BBB | BB01 | 55 | 0.25 |
| 16 | 4rb3_A_DT16_DT17 | miB | BB15 | 67 | 0.26 |
| 17 | 4rb3_A_DT17_DG18 | B12 | BB04 | 79 | 0.19 |
| 18 | 4rb3_A_DG18_DC19 | BBB | BB00 | 78 | 0.18 |
| 19 | 4rb3_A_DC19_DA20 | miB | BB10 | 76 | 0.42 |
| 20 | 4rb3_A_DA20_DA21 | BBB | BB00 | 44 | 0.26 |
| 21 | 4rb3_A_DA21_DT22 | miB | BB15 | 70 | 0.23 |
| 22 | 4rb3_A_DT22_DT23 | BBB | BB00 | 54 | 0.19 |
| 23 | 4rb3_A_DT23_DG24 | BB2 | BB07 | 28 | 0.30 |
| 24 | 4rb3_A_DG24_DC25 | BBB | BB00 | 41 | 0.48 |
| 25 | 4rb3_B_DG1_DC2 | NAN | NANT | 0 | 0.54 |
| 26 | 4rb3_B_DC2_DA3 | NAN | NANT | 0 | 0.64 |
| 27 | 4rb3_B_DA3_DA4 | BBB | BB00 | 67 | 0.26 |
| 28 | 4rb3_B_DA4_DT5 | BBB | BB01 | 81 | 0.20 |
| 29 | 4rb3_B_DT5_DT6 | BBB | BB01 | 63 | 0.22 |
| 30 | 4rb3_B_DT6_DG7 | BBB | BB00 | 20 | 0.39 |
| 31 | 4rb3_B_DG7_DC8 | B-A | BA16 | 15 | 0.41 |
| 32 | 4rb3_B_DC8_DA9 | NAN | NANT | 0 | 0.78 |
| 33 | 4rb3_B_DA9_DA10 | NAN | NANT | 0 | 0.46 |
| 34 | 4rb3_B_DA10_DA11 | NAN | NANT | 0 | 0.45 |
| 35 | 4rb3_B_DA11_DT12 | NAN | NANT | 0 | 0.52 |
| 36 | 4rb3_B_DT12_DG13 | NAN | NANT | 0 | 0.60 |
| 37 | 4rb3_B_DG13_DA14 | BBB | BB00 | 57 | 0.23 |
| 38 | 4rb3_B_DA14_DT15 | B-A | BA05 | 51 | 0.33 |
| 39 | 4rb3_B_DT15_DT16 | AAA | AA02 | 20 | 0.57 |
| 40 | 4rb3_B_DT16_DT17 | A-B | AB02 | 86 | 0.24 |
| 41 | 4rb3_B_DT17_DG18 | NAN | NANT | 0 | 0.36 |
| 42 | 4rb3_B_DG18_DC19 | miB | BB15 | 61 | 0.22 |
| 43 | 4rb3_B_DC19_DA20 | B12 | BB04 | 87 | 0.18 |
| 44 | 4rb3_B_DA20_DA21 | BBB | BB00 | 69 | 0.21 |
| 45 | 4rb3_B_DA21_DT22 | BBB | BB00 | 83 | 0.22 |
| 46 | 4rb3_B_DT22_DT23 | BBB | BB00 | 84 | 0.19 |
| 47 | 4rb3_B_DT23_DA24 | B12 | BB04 | 53 | 0.37 |
| 48 | 4rb3_B_DA24_DA25 | BBB | BB00 | 66 | 0.30 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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