Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of the catalytic core of human DNA polymerase alpha in ternary complex with an RNA-primed DNA template and dCTP
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4qcl_B_G1_C2 | AAA | AA00 | 92 | 0.12 |
| 02 | 4qcl_B_C2_C3 | AAA | AA00 | 81 | 0.19 |
| 03 | 4qcl_B_C3_U4 | AAA | AA00 | 94 | 0.13 |
| 04 | 4qcl_B_U4_G5 | AAA | AA00 | 64 | 0.22 |
| 05 | 4qcl_B_G5_G6 | AAA | AA00 | 92 | 0.25 |
| 06 | 4qcl_B_G6_A7 | AAw | AA01 | 90 | 0.14 |
| 07 | 4qcl_B_A7_G8 | NAN | NANT | 0 | 0.25 |
| 08 | 4qcl_B_G8_C9 | NAN | NANT | 0 | 0.40 |
| 09 | 4qcl_B_C9_G10 | AAA | AA00 | 86 | 0.31 |
| 10 | 4qcl_C_DA109_DG110 | NAN | NANT | 0 | 1.28 |
| 11 | 4qcl_C_DG110_DG111 | AAA | AA00 | 21 | 0.25 |
| 12 | 4qcl_C_DG111_DC112 | A-B | AB01 | 26 | 0.29 |
| 13 | 4qcl_C_DC112_DG113 | BBB | BB00 | 36 | 0.41 |
| 14 | 4qcl_C_DG113_DC114 | BBB | BB00 | 29 | 0.29 |
| 15 | 4qcl_C_DC114_DT115 | miB | BB12 | 16 | 0.42 |
| 16 | 4qcl_C_DT115_DC116 | BBw | BB02 | 18 | 0.66 |
| 17 | 4qcl_C_DC116_DC117 | BBB | BB00 | 61 | 0.30 |
| 18 | 4qcl_C_DC117_DA118 | BBB | BB00 | 59 | 0.32 |
| 19 | 4qcl_C_DA118_DG119 | BBw | BB02 | 67 | 0.25 |
| 20 | 4qcl_C_DG119_DG120 | BBB | BB00 | 51 | 0.35 |
| 21 | 4qcl_C_DG120_DC121 | BBB | BB00 | 28 | 0.21 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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