Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
he catalytic core of Rad2 in complex with DNA substrate (complex II)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4q0w_C_DT1_DG2 | A-B | AB01 | 38 | 0.13 |
| 02 | 4q0w_C_DG2_DA3 | BBB | BB00 | 87 | 0.19 |
| 03 | 4q0w_C_DA3_DT4 | BBB | BB01 | 98 | 0.13 |
| 04 | 4q0w_C_DT4_DC5 | BBB | BB00 | 68 | 0.18 |
| 05 | 4q0w_C_DC5_DC6 | BBB | BB00 | 88 | 0.18 |
| 06 | 4q0w_C_DC6_DG7 | B12 | BB04 | 72 | 0.19 |
| 07 | 4q0w_C_DG7_DT8 | BBB | BB01 | 91 | 0.18 |
| 08 | 4q0w_C_DT8_DC9 | BBB | BB01 | 39 | 0.15 |
| 09 | 4q0w_C_DC9_DC10 | BBB | BB00 | 84 | 0.22 |
| 10 | 4q0w_C_DC10_DA11 | BBB | BB00 | 68 | 0.28 |
| 11 | 4q0w_C_DA11_DC12 | B12 | BB04 | 94 | 0.11 |
| 12 | 4q0w_C_DC12_DC13 | BBB | BB00 | 90 | 0.13 |
| 13 | 4q0w_C_DC13_DT14 | BBB | BB00 | 91 | 0.13 |
| 14 | 4q0w_C_DT14_DT15 | B-A | BA01 | 12 | 0.37 |
| 15 | 4q0w_D_DT1_DA2 | NAN | NANT | 0 | 0.39 |
| 16 | 4q0w_D_DA2_DG3 | BB2 | BB07 | 57 | 0.29 |
| 17 | 4q0w_D_DG3_DG4 | BBB | BB00 | 92 | 0.13 |
| 18 | 4q0w_D_DG4_DT5 | BBB | BB00 | 94 | 0.11 |
| 19 | 4q0w_D_DT5_DG6 | BBB | BB00 | 68 | 0.36 |
| 20 | 4q0w_D_DG6_DG7 | BBB | BB01 | 80 | 0.19 |
| 21 | 4q0w_D_DG7_DA8 | BBB | BB01 | 63 | 0.25 |
| 22 | 4q0w_D_DA8_DC9 | BBB | BB01 | 94 | 0.12 |
| 23 | 4q0w_D_DC9_DG10 | BBB | BB00 | 77 | 0.22 |
| 24 | 4q0w_D_DG10_DG11 | B12 | BB04 | 94 | 0.17 |
| 25 | 4q0w_D_DG11_DA12 | BBB | BB00 | 97 | 0.14 |
| 26 | 4q0w_D_DA12_DT13 | BBB | BB00 | 64 | 0.20 |
| 27 | 4q0w_D_DT13_DC14 | BBB | BB00 | 78 | 0.21 |
| 28 | 4q0w_D_DC14_DA15 | BBB | BB01 | 10 | 0.52 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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