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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
U1-70k in complex with U1 snRNA stem-loops 1 and U1-A RRM in complex with stem-loop 2

Results of the assignment of 54 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
014pkd_V_GTP59_G60NANNANT00.46 AA03
024pkd_V_G60_A61AAAAA00570.30 AA00
034pkd_V_A61_U62AAAAA08800.22 AA08
044pkd_V_U62_C63AAAAA08770.17 AA08
054pkd_V_C63_C64AAAAA08790.20 AA08
064pkd_V_C64_A65AAAAA08690.23 AA08
074pkd_V_A65_U66AAAAA08900.22 AA08
084pkd_V_U66_U67ICLIC02940.16 IC02
094pkd_V_U67_G68NANNANT00.63 ZZ02
104pkd_V_G68_C69NANNANT00.74 IC02
114pkd_V_C69_A70NANNANT00.71 OP15
124pkd_V_A70_C71AAAAA08750.17 AA08
134pkd_V_C71_U72NANNANT01.47 OP05
144pkd_V_U72_C73NANNANT00.78 OP07
154pkd_V_C73_C74SYNAAS1210.44 AAS1
164pkd_V_C74_G75NANNANT01.47 OP17
174pkd_V_G75_G76AAAAA03920.21 AA03
184pkd_V_G76_A77AAAAA08720.24 AA08
194pkd_V_A77_U78AAAAA08820.21 AA08
204pkd_V_U78_C79AAAAA08740.24 AA08
214pkd_V_C79_C80AAAAA00780.19 AA00
224pkd_V_C80_A81AAAAA03910.19 AA03
234pkd_V_A81_G82AAAAA00890.09 AA00
244pkd_V_G82_G83AAAAA00160.21 AA00
254pkd_V_G83_A84AAAAA00560.11 AA00
264pkd_V_A84_G85AAwAA01170.36 AA01
274pkd_V_G85_A86AAAAA03720.41 AA03
284pkd_V_A86_U87NANNANT00.35 AA06
294pkd_V_U87_A88NANNANT00.92 OP28
304pkd_V_A88_C89OPNOP12480.37 OP12
314pkd_V_C89_C90AAAAA00670.25 AA00
324pkd_V_C90_A91AAAAA00810.17 AA00
334pkd_V_A91_U92AAAAA00760.23 AA00
344pkd_V_U92_G93NANNANT02.03 OP1S
354pkd_V_G93_A94NANNANT00.84 OP06
364pkd_V_A94_U95NANNANT00.77 OP14
374pkd_V_U95_C96NANNANT00.88 OP22
384pkd_V_C96_A97OPNOP22610.23 OP22
394pkd_V_A97_C98NANNANT00.36 OP21
404pkd_V_C98_G99SYNAB2S730.29 AB2S
414pkd_V_G99_A100NANNANT01.49 OPS1
424pkd_V_A100_A101AAAAA08520.43 AA08
434pkd_V_A101_G102AAAAA08270.63 AA08
444pkd_V_G102_G103AAAAA00680.26 AA00
454pkd_V_G103_U104AAAAA00600.18 AA00
464pkd_V_U104_G105AAAAA00570.18 AA00
474pkd_V_G105_G106AAwAA01230.22 AA01
484pkd_V_G106_U107AAAAA00590.41 AA00
494pkd_V_U107_U108AAAAA00810.21 AA00
504pkd_V_U108_U109AAAAA08890.17 AA08
514pkd_V_U109_U110AAAAA03730.32 AA03
524pkd_V_U110_C111AAwAA01690.29 AA01
534pkd_V_C111_C112AAAAA08500.32 AA08
544pkd_V_C112_U113AAAAA03930.16 AA03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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