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Conformers: ABBIImiBZICOPNSYNN
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Minimal U1 snRNP

Results of the assignment of 224 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0014pjo_1_GTP1_G2AAAAA08410.36 AA08
0024pjo_1_G2_A3AAAAA00810.14 AA00
0034pjo_1_A3_C4AAAAA08790.20 AA08
0044pjo_1_C4_U5AAAAA04810.29 AA04
0054pjo_1_U5_U6AAAAA08890.16 AA08
0064pjo_1_U6_A7AAAAA00810.15 AA00
0074pjo_1_A7_C8AAAAA00870.11 AA00
0084pjo_1_C8_C9AAAAA00780.15 AA00
0094pjo_1_C9_U10AAAAA04790.31 AA04
0104pjo_1_U10_G11A-BAB05580.19 AB05
0114pjo_1_G11_G12OPNOP13800.34 OP13
0124pjo_1_G12_C13AAAAA00810.16 AA00
0134pjo_1_C13_A14AAAAA00870.19 AA00
0144pjo_1_A14_G15AAAAA00830.15 AA00
0154pjo_1_G15_U16AAAAA00750.13 AA00
0164pjo_1_U16_G17AAAAA00800.18 AA00
0174pjo_1_G17_A18ZZZZZ01210.43 ZZ01
0184pjo_1_A18_G19NANNANT00.66 ZZ1S
0194pjo_1_G19_G20NANNANT01.04 OP30
0204pjo_1_G20_U21AAAAA00960.12 AA00
0214pjo_1_U21_G22AAAAA00730.17 AA00
0224pjo_1_G22_C23AAAAA08750.25 AA08
0234pjo_1_C23_A24AAAAA00870.18 AA00
0244pjo_1_A24_C25AAAAA00620.20 AA00
0254pjo_1_C25_A26AAAAA00530.25 AA00
0264pjo_1_A26_C27AAAAA04870.18 AA04
0274pjo_1_C27_A28AAAAA00700.21 AA00
0284pjo_1_A28_C29AAAAA08750.21 AA08
0294pjo_1_C29_U30AAAAA00650.19 AA00
0304pjo_1_U30_G31AAwAA01640.26 AA01
0314pjo_1_G31_C122AAAAA08820.20 AA08
0324pjo_1_C122_A123AAAAA00640.23 AA00
0334pjo_1_A123_U124NANNANT02.01 ZZ2S
0344pjo_1_U124_A125NANNANT00.80 OP18
0354pjo_1_A125_A126NANNANT00.58 IC03
0364pjo_1_A126_U127NANNANT00.91 IC05
0374pjo_1_U127_U128NANNANT01.40 IC03
0384pjo_1_U128_U129NANNANT00.77 OP22
0394pjo_1_U129_G130NANNANT00.64 OP12
0404pjo_1_G130_U131NANNANT00.72 OP28
0414pjo_1_U131_G132NANNANT00.96 OP10
0424pjo_1_G132_G133NANNANT01.92 BB1S
0434pjo_1_G133_U134NANNANT01.25 OP25
0444pjo_1_U134_A135NANNANT01.11 OP17
0454pjo_1_A135_G136NANNANT00.63 OP04
0464pjo_1_G136_U137NANNANT01.73 AB02
0474pjo_1_U137_G138NANNANT01.76 OP29
0484pjo_X_A1_G2AAAAA00740.23 AA00
0494pjo_X_G2_G3AAAAA00370.30 AA00
0504pjo_X_G3_U4AAAAA08720.15 AA08
0514pjo_X_U4_A5AAAAA08840.20 AA08
0524pjo_X_A5_A6AAAAA08680.26 AA08
0534pjo_X_A6_G7AAAAA04890.20 AA04
0544pjo_X_G7_U8AAAAA04750.30 AA04
0554pjo_X_U8_C9AAAAA04920.17 AA04
0564pjo_X_C9_C10AAAAA00790.19 AA00
0574pjo_2_GTP1_G2AAAAA08690.23 AA08
0584pjo_2_G2_A3AAAAA00820.14 AA00
0594pjo_2_A3_C4AAAAA08790.19 AA08
0604pjo_2_C4_U5AAAAA04800.28 AA04
0614pjo_2_U5_U6AAAAA08890.15 AA08
0624pjo_2_U6_A7AAAAA00830.15 AA00
0634pjo_2_A7_C8AAAAA00870.10 AA00
0644pjo_2_C8_C9AAAAA00770.14 AA00
0654pjo_2_C9_U10AAAAA04790.30 AA04
0664pjo_2_U10_G11A-BAB05490.17 AB05
0674pjo_2_G11_G12OPNOP13810.35 OP13
0684pjo_2_G12_C13AAAAA00810.16 AA00
0694pjo_2_C13_A14AAAAA00900.19 AA00
0704pjo_2_A14_G15AAAAA00830.15 AA00
0714pjo_2_G15_U16AAAAA00770.13 AA00
0724pjo_2_U16_G17AAAAA00800.18 AA00
0734pjo_2_G17_A18ZZZZZ01240.41 ZZ01
0744pjo_2_A18_G19NANNANT00.68 ZZ1S
0754pjo_2_G19_G20NANNANT01.03 OP30
0764pjo_2_G20_U21AAAAA00950.11 AA00
0774pjo_2_U21_G22AAAAA00680.18 AA00
0784pjo_2_G22_C23AAAAA08720.26 AA08
0794pjo_2_C23_A24AAAAA00860.17 AA00
0804pjo_2_A24_C25AAAAA00650.21 AA00
0814pjo_2_C25_A26AAAAA00470.24 AA00
0824pjo_2_A26_C27AAAAA00560.17 AA00
0834pjo_2_C27_A28AAAAA00730.21 AA00
0844pjo_2_A28_C29AAAAA08750.19 AA08
0854pjo_2_C29_U30AAAAA00660.19 AA00
0864pjo_2_U30_G31AAwAA01650.25 AA01
0874pjo_2_G31_C122AAAAA08830.20 AA08
0884pjo_2_C122_A123AAAAA00610.23 AA00
0894pjo_2_A123_U124NANNANT02.01 ZZ2S
0904pjo_2_U124_A125NANNANT00.79 OP18
0914pjo_2_A125_A126NANNANT00.59 IC03
0924pjo_2_A126_U127NANNANT00.91 IC05
0934pjo_2_U127_U128NANNANT01.39 IC03
0944pjo_2_U128_U129NANNANT00.79 OP22
0954pjo_2_U129_G130NANNANT00.63 OP12
0964pjo_2_G130_U131NANNANT00.73 OP28
0974pjo_2_U131_G132NANNANT00.98 OP10
0984pjo_2_G132_G133NANNANT01.90 BB1S
0994pjo_2_G133_U134NANNANT01.21 OP25
1004pjo_2_U134_A135NANNANT01.11 OP17
1014pjo_2_A135_G136NANNANT01.05 OP09
1024pjo_2_G136_U137NANNANT00.52 OP12
1034pjo_2_U137_G138NANNANT01.35 OP21
1044pjo_x_A1_G2AAAAA04920.20 AA04
1054pjo_x_G2_G3AAAAA04910.20 AA04
1064pjo_x_G3_U4AAAAA04920.19 AA04
1074pjo_x_U4_A5AAAAA08830.19 AA08
1084pjo_x_A5_A6AAAAA00850.09 AA00
1094pjo_x_A6_G7AAAAA00880.22 AA00
1104pjo_x_G7_U8AAAAA00660.23 AA00
1114pjo_x_U8_C9AAAAA04900.15 AA04
1124pjo_x_C9_C10AAAAA00810.22 AA00
1134pjo_3_GTP1_G2AAAAA08580.28 AA08
1144pjo_3_G2_A3AAAAA00810.14 AA00
1154pjo_3_A3_C4AAAAA08800.19 AA08
1164pjo_3_C4_U5AAAAA04790.28 AA04
1174pjo_3_U5_U6AAAAA08880.17 AA08
1184pjo_3_U6_A7AAAAA00810.16 AA00
1194pjo_3_A7_C8AAAAA00870.10 AA00
1204pjo_3_C8_C9AAAAA00820.14 AA00
1214pjo_3_C9_U10AAAAA04810.32 AA04
1224pjo_3_U10_G11A-BAB05420.16 AB05
1234pjo_3_G11_G12OPNOP13850.32 OP13
1244pjo_3_G12_C13AAAAA00790.16 AA00
1254pjo_3_C13_A14AAAAA00890.18 AA00
1264pjo_3_A14_G15AAAAA00820.14 AA00
1274pjo_3_G15_U16AAAAA00740.13 AA00
1284pjo_3_U16_G17AAAAA00800.18 AA00
1294pjo_3_G17_A18ZZZZZ01210.42 ZZ01
1304pjo_3_A18_G19NANNANT00.67 ZZ1S
1314pjo_3_G19_G20NANNANT01.03 OP30
1324pjo_3_G20_U21AAAAA00950.11 AA00
1334pjo_3_U21_G22AAAAA00640.18 AA00
1344pjo_3_G22_C23AAAAA08690.27 AA08
1354pjo_3_C23_A24AAAAA00860.16 AA00
1364pjo_3_A24_C25AAAAA08780.15 AA08
1374pjo_3_C25_A26AAAAA00550.24 AA00
1384pjo_3_A26_C27AAAAA04860.17 AA04
1394pjo_3_C27_A28AAAAA00720.20 AA00
1404pjo_3_A28_C29AAAAA08730.22 AA08
1414pjo_3_C29_U30AAAAA00650.19 AA00
1424pjo_3_U30_G31AAwAA01600.27 AA01
1434pjo_3_G31_C122AAAAA08840.20 AA08
1444pjo_3_C122_A123AAAAA00660.23 AA00
1454pjo_3_A123_U124NANNANT02.01 ZZ2S
1464pjo_3_U124_A125NANNANT00.81 OP18
1474pjo_3_A125_A126NANNANT00.59 IC03
1484pjo_3_A126_U127NANNANT00.88 IC05
1494pjo_3_U127_U128NANNANT01.39 IC03
1504pjo_3_U128_U129NANNANT00.80 OP22
1514pjo_3_U129_G130NANNANT00.63 OP12
1524pjo_3_G130_U131NANNANT00.69 OP28
1534pjo_3_U131_G132NANNANT00.96 OP10
1544pjo_3_G132_G133NANNANT01.89 BB1S
1554pjo_3_G133_U134NANNANT01.20 OP25
1564pjo_3_U134_A135NANNANT01.11 OP17
1574pjo_3_A135_G136NANNANT00.61 OP04
1584pjo_3_G136_U137NANNANT01.82 AB02
1594pjo_Y_A1_G2AAAAA08580.26 AA08
1604pjo_Y_G2_G3AAAAA08440.30 AA08
1614pjo_Y_G3_U4AAAAA08430.18 AA08
1624pjo_Y_U4_A5AAAAA00680.27 AA00
1634pjo_Y_A5_A6AAAAA00720.16 AA00
1644pjo_Y_A6_G7AAAAA04930.10 AA04
1654pjo_Y_G7_U8AAAAA08620.30 AA08
1664pjo_Y_U8_C9AAAAA08760.14 AA08
1674pjo_Y_C9_C10AAAAA00620.27 AA00
1684pjo_4_GTP1_G2AAAAA08620.38 AA08
1694pjo_4_G2_A3AAAAA00820.14 AA00
1704pjo_4_A3_C4AAAAA08800.19 AA08
1714pjo_4_C4_U5AAAAA04790.29 AA04
1724pjo_4_U5_U6AAAAA08890.15 AA08
1734pjo_4_U6_A7AAAAA00820.15 AA00
1744pjo_4_A7_C8AAAAA00860.10 AA00
1754pjo_4_C8_C9AAAAA00790.14 AA00
1764pjo_4_C9_U10AAAAA04820.31 AA04
1774pjo_4_U10_G11A-BAB05550.16 AB05
1784pjo_4_G11_G12OPNOP13810.32 OP13
1794pjo_4_G12_C13AAAAA00840.15 AA00
1804pjo_4_C13_A14AAAAA00890.18 AA00
1814pjo_4_A14_G15AAAAA00810.15 AA00
1824pjo_4_G15_U16AAAAA00740.13 AA00
1834pjo_4_U16_G17AAAAA00810.18 AA00
1844pjo_4_G17_A18ZZZZZ01230.41 ZZ01
1854pjo_4_A18_G19NANNANT00.61 ZZ1S
1864pjo_4_G19_G20NANNANT01.05 OP30
1874pjo_4_G20_U21AAAAA00950.11 AA00
1884pjo_4_U21_G22AAAAA00650.19 AA00
1894pjo_4_G22_C23AAAAA08680.28 AA08
1904pjo_4_C23_A24AAAAA00830.17 AA00
1914pjo_4_A24_C25AAAAA08790.14 AA08
1924pjo_4_C25_A26AAAAA00490.24 AA00
1934pjo_4_A26_C27AAAAA04870.18 AA04
1944pjo_4_C27_A28AAAAA00750.21 AA00
1954pjo_4_A28_C29AAAAA08740.20 AA08
1964pjo_4_C29_U30AAAAA00660.19 AA00
1974pjo_4_U30_G31AAwAA01630.26 AA01
1984pjo_4_G31_C122AAAAA08840.20 AA08
1994pjo_4_C122_A123AAAAA00640.23 AA00
2004pjo_4_A123_U124NANNANT02.02 ZZ2S
2014pjo_4_U124_A125NANNANT00.82 OP18
2024pjo_4_A125_A126NANNANT00.60 IC03
2034pjo_4_A126_U127NANNANT00.88 IC05
2044pjo_4_U127_U128NANNANT01.40 IC03
2054pjo_4_U128_U129NANNANT00.83 OP22
2064pjo_4_U129_G130NANNANT00.64 OP12
2074pjo_4_G130_U131NANNANT00.69 OP28
2084pjo_4_U131_G132NANNANT00.98 OP10
2094pjo_4_G132_G133NANNANT01.90 BB1S
2104pjo_4_G133_U134NANNANT01.19 OP25
2114pjo_4_U134_A135NANNANT01.14 OP17
2124pjo_4_A135_G136NANNANT00.63 OP04
2134pjo_4_G136_U137NANNANT01.98 OP26
2144pjo_4_U137_G138NANNANT01.71 OP30
2154pjo_4_G138_G139NANNANT01.48 AA00
2164pjo_y_A1_G2AAAAA04630.30 AA04
2174pjo_y_G2_G3AAAAA08420.36 AA08
2184pjo_y_G3_U4AAAAA08770.17 AA08
2194pjo_y_U4_A5AAAAA00850.13 AA00
2204pjo_y_A5_A6AAAAA04810.28 AA04
2214pjo_y_A6_G7AAAAA04900.21 AA04
2224pjo_y_G7_U8AAAAA00550.26 AA00
2234pjo_y_U8_C9AAAAA00700.27 AA00
2244pjo_y_C9_C10AAAAA00830.22 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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