Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
The 5-Hydroxymethylcytosine-Specific Restriction Enzyme AbaSI in a Complex with Product-like DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 60 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4par_E_DT1_DG2 | BBB | BB00 | 74 | 0.32 |
| 02 | 4par_E_DG2_DC3 | B-A | BA05 | 12 | 0.34 |
| 03 | 4par_E_DC3_DT4 | A-B | AB03 | 52 | 0.38 |
| 04 | 4par_E_DT4_5HC5 | BBB | BB00 | 84 | 0.21 |
| 05 | 4par_E_5HC5_DG6 | B12 | BB04 | 69 | 0.19 |
| 06 | 4par_E_DG6_DA7 | B12 | BB04 | 90 | 0.11 |
| 07 | 4par_E_DA7_DT8 | BBB | BB01 | 72 | 0.17 |
| 08 | 4par_E_DT8_DA9 | BBB | BB00 | 34 | 0.21 |
| 09 | 4par_E_DA9_DC10 | BBB | BB00 | 71 | 0.21 |
| 10 | 4par_E_DC10_DA11 | B12 | BB04 | 66 | 0.16 |
| 11 | 4par_E_DA11_DA12 | BBB | BB00 | 76 | 0.18 |
| 12 | 4par_E_DA12_DT13 | BBB | BB00 | 94 | 0.19 |
| 13 | 4par_E_DT13_DA14 | BB2 | BB07 | 79 | 0.33 |
| 14 | 4par_E_DA14_DG15 | BBB | BB00 | 74 | 0.21 |
| 15 | 4par_E_DG15_DG16 | BBB | BB00 | 11 | 0.31 |
| 16 | 4par_E_DG16_DC17 | BBB | BB00 | 33 | 0.25 |
| 17 | 4par_E_DC17_DC18 | BBB | BB00 | 74 | 0.24 |
| 18 | 4par_G_DT29_DA30 | BBB | BB00 | 60 | 0.40 |
| 19 | 4par_G_DA30_DT31 | B-A | BA01 | 32 | 0.18 |
| 20 | 4par_G_DT31_DT32 | A-B | AB01 | 62 | 0.33 |
| 21 | 4par_G_DT32_DG33 | B12 | BB04 | 73 | 0.15 |
| 22 | 4par_G_DG33_DT34 | BBB | BB00 | 76 | 0.17 |
| 23 | 4par_G_DT34_DA35 | BBB | BB00 | 91 | 0.14 |
| 24 | 4par_G_DA35_DT36 | BBB | BB00 | 78 | 0.18 |
| 25 | 4par_G_DT36_DC37 | BBB | BB00 | 62 | 0.30 |
| 26 | 4par_G_DC37_DG38 | BBB | BB00 | 74 | 0.25 |
| 27 | 4par_G_DG38_DA39 | B12 | BB04 | 83 | 0.17 |
| 28 | 4par_G_DA39_DG40 | BBB | BB00 | 49 | 0.17 |
| 29 | 4par_G_DG40_DC41 | BBB | BB00 | 81 | 0.17 |
| 30 | 4par_G_DC41_DA42 | BBB | BB00 | 61 | 0.26 |
| 31 | 4par_F_DT1_DG2 | BBB | BB00 | 55 | 0.44 |
| 32 | 4par_F_DG2_DC3 | BBB | BB00 | 41 | 0.29 |
| 33 | 4par_F_DC3_DT4 | BBB | BB00 | 55 | 0.28 |
| 34 | 4par_F_DT4_5HC5 | NAN | NANT | 0 | 0.51 |
| 35 | 4par_F_5HC5_DG6 | B12 | BB04 | 39 | 0.44 |
| 36 | 4par_F_DG6_DA7 | BBB | BB01 | 78 | 0.20 |
| 37 | 4par_F_DA7_DT8 | BBB | BB01 | 41 | 0.20 |
| 38 | 4par_F_DT8_DA9 | BBB | BB00 | 19 | 0.28 |
| 39 | 4par_F_DA9_DC10 | BBB | BB00 | 91 | 0.12 |
| 40 | 4par_F_DC10_DA11 | B12 | BB04 | 56 | 0.30 |
| 41 | 4par_F_DA11_DA12 | BBB | BB00 | 77 | 0.23 |
| 42 | 4par_F_DA12_DT13 | NAN | NANT | 0 | 0.38 |
| 43 | 4par_F_DT13_DA14 | B-A | BA17 | 68 | 0.23 |
| 44 | 4par_F_DA14_DG15 | BBB | BB00 | 51 | 0.20 |
| 45 | 4par_F_DG15_DG16 | BBB | BB00 | 90 | 0.18 |
| 46 | 4par_F_DG16_DC17 | BBB | BB01 | 66 | 0.17 |
| 47 | 4par_F_DC17_DC18 | BBB | BB00 | 36 | 0.32 |
| 48 | 4par_H_DT29_DA30 | BBB | BB00 | 54 | 0.28 |
| 49 | 4par_H_DA30_DT31 | BBB | BB00 | 35 | 0.26 |
| 50 | 4par_H_DT31_DT32 | BBB | BB00 | 68 | 0.21 |
| 51 | 4par_H_DT32_DG33 | B12 | BB04 | 82 | 0.24 |
| 52 | 4par_H_DG33_DT34 | BBB | BB00 | 80 | 0.24 |
| 53 | 4par_H_DT34_DA35 | BBB | BB00 | 86 | 0.21 |
| 54 | 4par_H_DA35_DT36 | BBB | BB00 | 54 | 0.23 |
| 55 | 4par_H_DT36_DC37 | BBB | BB00 | 64 | 0.27 |
| 56 | 4par_H_DC37_DG38 | BBB | BB00 | 47 | 0.29 |
| 57 | 4par_H_DG38_DA39 | B12 | BB04 | 70 | 0.42 |
| 58 | 4par_H_DA39_DG40 | BBB | BB00 | 74 | 0.20 |
| 59 | 4par_H_DG40_DC41 | BBB | BB00 | 82 | 0.16 |
| 60 | 4par_H_DC41_DA42 | BBB | BB00 | 48 | 0.39 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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