Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraints
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4oq8_B_A.A161_A.A162 | AAA | AA08 | 81 | 0.25 |
| 02 | 4oq8_B_A.A162_A.A163 | AAA | AA00 | 81 | 0.15 |
| 03 | 4oq8_B_A.A163_A.A164 | AAA | AA00 | 77 | 0.20 |
| 04 | 4oq8_B_A.A164_A.A165 | AAA | AA00 | 89 | 0.13 |
| 05 | 4oq8_B_A.A165_A.A166 | AAA | AA00 | 77 | 0.20 |
| 06 | 4oq8_B_A.A166_A.A167 | AAA | AA00 | 92 | 0.24 |
| 07 | 4oq8_B_A.A167_A.A168 | AAA | AA00 | 83 | 0.15 |
| 08 | 4oq8_B_A.A168_A.A169 | AAA | AA00 | 82 | 0.20 |
| 09 | 4oq8_B_A.A169_A.A170 | AAA | AA00 | 66 | 0.29 |
| 10 | 4oq8_C_U.A181_U.A182 | AAA | AA00 | 67 | 0.32 |
| 11 | 4oq8_C_U.A182_U.A183 | AAA | AA00 | 28 | 0.27 |
| 12 | 4oq8_C_U.A183_U.A184 | AAA | AA00 | 65 | 0.28 |
| 13 | 4oq8_C_U.A184_U.A185 | AAA | AA00 | 89 | 0.18 |
| 14 | 4oq8_C_U.A185_U.A186 | AAA | AA00 | 80 | 0.20 |
| 15 | 4oq8_C_U.A186_U.A187 | AAA | AA00 | 88 | 0.31 |
| 16 | 4oq8_C_U.A187_U.A188 | AAA | AA00 | 62 | 0.30 |
| 17 | 4oq8_C_U.A188_U.A189 | AAA | AA00 | 53 | 0.27 |
| 18 | 4oq8_C_U.A189_U.A190 | AAA | AA00 | 55 | 0.41 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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